Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23601 | 5' | -52.5 | NC_005261.1 | + | 34586 | 0.68 | 0.943193 |
Target: 5'- cCGAGUGCGGcuucgacgacGAcGGCCUg-GCCGAcGCg -3' miRNA: 3'- -GCUCACGCU----------CUuCUGGAagCGGUU-CG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 137770 | 0.68 | 0.943193 |
Target: 5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3' miRNA: 3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 136206 | 0.68 | 0.943193 |
Target: 5'- aGGGaGCGAGGAGGCaaaaCGCCAuccggggacuagAGCg -3' miRNA: 3'- gCUCaCGCUCUUCUGgaa-GCGGU------------UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 1016 | 0.68 | 0.943193 |
Target: 5'- gCGGGggGCGGGuGGGCUUUUGCgGAGg -3' miRNA: 3'- -GCUCa-CGCUCuUCUGGAAGCGgUUCg -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 33719 | 0.69 | 0.888377 |
Target: 5'- aCGAGggGCGGuGggGGCCUgccccucgcgcggCGCCGGGg -3' miRNA: 3'- -GCUCa-CGCU-CuuCUGGAa------------GCGGUUCg -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 14696 | 0.69 | 0.891155 |
Target: 5'- -uGGUgGCGAGggGgggcGCCUUCGgCCGAGa -3' miRNA: 3'- gcUCA-CGCUCuuC----UGGAAGC-GGUUCg -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 6434 | 0.69 | 0.891155 |
Target: 5'- gCGAGgGCGGuccGggGGCCg--GCCGGGCu -3' miRNA: 3'- -GCUCaCGCU---CuuCUGGaagCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 27470 | 0.69 | 0.891155 |
Target: 5'- gCGGG-GCGGGcAGGCCcUCcCCGGGCg -3' miRNA: 3'- -GCUCaCGCUCuUCUGGaAGcGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 29390 | 0.69 | 0.897931 |
Target: 5'- cCGAGauccGCGAGgcGGCCgcgCGCUAcGCg -3' miRNA: 3'- -GCUCa---CGCUCuuCUGGaa-GCGGUuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 121407 | 0.69 | 0.897931 |
Target: 5'- cCGAGUGCGAcGGcuGCCgcCGCCGcuacggGGCg -3' miRNA: 3'- -GCUCACGCU-CUucUGGaaGCGGU------UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 30704 | 0.69 | 0.910748 |
Target: 5'- gGAGgcccGCGGGAGccCCggCGCCGGGCc -3' miRNA: 3'- gCUCa---CGCUCUUcuGGaaGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 132673 | 0.7 | 0.852972 |
Target: 5'- uGGGUGCGAGGacaagauGGGCUUcCGCguGGCc -3' miRNA: 3'- gCUCACGCUCU-------UCUGGAaGCGguUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 119582 | 0.7 | 0.853776 |
Target: 5'- gCGAGcGCGAGAccguGGCCgccccguaUGCCGAGCc -3' miRNA: 3'- -GCUCaCGCUCUu---CUGGaa------GCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 24311 | 0.7 | 0.861701 |
Target: 5'- aGGGUGgGGGGgggggcAGGCCca-GCCGAGCu -3' miRNA: 3'- gCUCACgCUCU------UCUGGaagCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 11752 | 0.7 | 0.876889 |
Target: 5'- gCGAgcGUGCGAGAuccgaucagagAGGCCUuuauUUGCgGGGCg -3' miRNA: 3'- -GCU--CACGCUCU-----------UCUGGA----AGCGgUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 38664 | 0.7 | 0.88414 |
Target: 5'- gCGGGUGCGGGcccGGGCC--CGCCAGucucGCg -3' miRNA: 3'- -GCUCACGCUCu--UCUGGaaGCGGUU----CG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 22717 | 0.71 | 0.84564 |
Target: 5'- uCGAGgaGCcGGAGGACCagCGCCAgucgGGCg -3' miRNA: 3'- -GCUCa-CGcUCUUCUGGaaGCGGU----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 68952 | 0.71 | 0.837299 |
Target: 5'- aCGAGgcGCGcGggGACCUggugcgCGCCAccgcGGCc -3' miRNA: 3'- -GCUCa-CGCuCuuCUGGAa-----GCGGU----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 72472 | 0.71 | 0.828762 |
Target: 5'- gCGAGcGCGAGcgcGGCCagCGCCAggAGCg -3' miRNA: 3'- -GCUCaCGCUCuu-CUGGaaGCGGU--UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 121142 | 0.72 | 0.792814 |
Target: 5'- gCGAGcGCGAGuAGGACCggguagggUUGcCCGGGCg -3' miRNA: 3'- -GCUCaCGCUC-UUCUGGa-------AGC-GGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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