miRNA display CGI


Results 61 - 70 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 121142 0.72 0.792814
Target:  5'- gCGAGcGCGAGuAGGACCggguagggUUGcCCGGGCg -3'
miRNA:   3'- -GCUCaCGCUC-UUCUGGa-------AGC-GGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 28578 0.72 0.773886
Target:  5'- cCGAGgcgcGCGAGcgccggcGGGCCgcccgCGCCGAGCu -3'
miRNA:   3'- -GCUCa---CGCUCu------UCUGGaa---GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 128129 0.73 0.724404
Target:  5'- cCGAGUGCgGAGAGaggcGACggUCGCCGGGg -3'
miRNA:   3'- -GCUCACG-CUCUU----CUGgaAGCGGUUCg -5'
23601 5' -52.5 NC_005261.1 + 45187 0.74 0.697767
Target:  5'- cCGAGUGUGAGGccaugccggccuuccGGGgCUUCGCCuucGCg -3'
miRNA:   3'- -GCUCACGCUCU---------------UCUgGAAGCGGuu-CG- -5'
23601 5' -52.5 NC_005261.1 + 43482 0.75 0.620365
Target:  5'- gGAGUGCGAGGccuucgcggcGGACCUccugcgcugCGCCA-GCg -3'
miRNA:   3'- gCUCACGCUCU----------UCUGGAa--------GCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 49210 0.76 0.568126
Target:  5'- gCGAGgGCG-GGAGGCCggCGCCcAGCg -3'
miRNA:   3'- -GCUCaCGCuCUUCUGGaaGCGGuUCG- -5'
23601 5' -52.5 NC_005261.1 + 35880 0.76 0.557792
Target:  5'- uGGGUGCGAGAacgccuccuaaAGACCccCGCCGcGGCa -3'
miRNA:   3'- gCUCACGCUCU-----------UCUGGaaGCGGU-UCG- -5'
23601 5' -52.5 NC_005261.1 + 135207 0.77 0.517058
Target:  5'- cCGAGgcgGCGcAGAGGGCCacgGCCGAGCg -3'
miRNA:   3'- -GCUCa--CGC-UCUUCUGGaagCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 136629 0.81 0.314287
Target:  5'- cCGAGggcgGCGGGAAGGCCUggucCGCCugGAGCu -3'
miRNA:   3'- -GCUCa---CGCUCUUCUGGAa---GCGG--UUCG- -5'
23601 5' -52.5 NC_005261.1 + 90945 1.12 0.003681
Target:  5'- uCGAGUGCGAGAAGACCUUCGCCAAGCu -3'
miRNA:   3'- -GCUCACGCUCUUCUGGAAGCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.