miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 33719 0.69 0.888377
Target:  5'- aCGAGggGCGGuGggGGCCUgccccucgcgcggCGCCGGGg -3'
miRNA:   3'- -GCUCa-CGCU-CuuCUGGAa------------GCGGUUCg -5'
23601 5' -52.5 NC_005261.1 + 29390 0.69 0.897931
Target:  5'- cCGAGauccGCGAGgcGGCCgcgCGCUAcGCg -3'
miRNA:   3'- -GCUCa---CGCUCuuCUGGaa-GCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 14696 0.69 0.891155
Target:  5'- -uGGUgGCGAGggGgggcGCCUUCGgCCGAGa -3'
miRNA:   3'- gcUCA-CGCUCuuC----UGGAAGC-GGUUCg -5'
23601 5' -52.5 NC_005261.1 + 27470 0.69 0.891155
Target:  5'- gCGGG-GCGGGcAGGCCcUCcCCGGGCg -3'
miRNA:   3'- -GCUCaCGCUCuUCUGGaAGcGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 30704 0.69 0.910748
Target:  5'- gGAGgcccGCGGGAGccCCggCGCCGGGCc -3'
miRNA:   3'- gCUCa---CGCUCUUcuGGaaGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 6434 0.69 0.891155
Target:  5'- gCGAGgGCGGuccGggGGCCg--GCCGGGCu -3'
miRNA:   3'- -GCUCaCGCU---CuuCUGGaagCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 136206 0.68 0.943193
Target:  5'- aGGGaGCGAGGAGGCaaaaCGCCAuccggggacuagAGCg -3'
miRNA:   3'- gCUCaCGCUCUUCUGgaa-GCGGU------------UCG- -5'
23601 5' -52.5 NC_005261.1 + 1016 0.68 0.943193
Target:  5'- gCGGGggGCGGGuGGGCUUUUGCgGAGg -3'
miRNA:   3'- -GCUCa-CGCUCuUCUGGAAGCGgUUCg -5'
23601 5' -52.5 NC_005261.1 + 87 0.68 0.943193
Target:  5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3'
miRNA:   3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5'
23601 5' -52.5 NC_005261.1 + 117273 0.68 0.938414
Target:  5'- uCGAGgacgGCGA----GCCUggCGCCGAGCc -3'
miRNA:   3'- -GCUCa---CGCUcuucUGGAa-GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 58575 0.68 0.938414
Target:  5'- gCGAGcgGCGAGcgcGAGACCUUgaucaccucccCGCCAAa- -3'
miRNA:   3'- -GCUCa-CGCUC---UUCUGGAA-----------GCGGUUcg -5'
23601 5' -52.5 NC_005261.1 + 81356 0.68 0.933899
Target:  5'- gCGGGggcuUGCGGGggGcGCCgggcucgcugggggCGCCGGGCu -3'
miRNA:   3'- -GCUC----ACGCUCuuC-UGGaa------------GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 137770 0.68 0.943193
Target:  5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3'
miRNA:   3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5'
23601 5' -52.5 NC_005261.1 + 34586 0.68 0.943193
Target:  5'- cCGAGUGCGGcuucgacgacGAcGGCCUg-GCCGAcGCg -3'
miRNA:   3'- -GCUCACGCU----------CUuCUGGAagCGGUU-CG- -5'
23601 5' -52.5 NC_005261.1 + 43430 0.68 0.947724
Target:  5'- cCGccgGCGGGGAGcuggcucggcGCCUggacgUCGCCGGGCg -3'
miRNA:   3'- -GCucaCGCUCUUC----------UGGA-----AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 13443 0.68 0.947724
Target:  5'- cCGGGUGCaGGcAGGCCggCGCCucggGGUg -3'
miRNA:   3'- -GCUCACGcUCuUCUGGaaGCGGu---UCG- -5'
23601 5' -52.5 NC_005261.1 + 6235 0.68 0.928103
Target:  5'- -aGGUGCGcccggGGAGGGCCUgccCGCCccgcgGGGCg -3'
miRNA:   3'- gcUCACGC-----UCUUCUGGAa--GCGG-----UUCG- -5'
23601 5' -52.5 NC_005261.1 + 30356 0.68 0.92257
Target:  5'- ----cGCGGcccuGAAGGCCggcgCGCCGGGCg -3'
miRNA:   3'- gcucaCGCU----CUUCUGGaa--GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 43847 0.68 0.928103
Target:  5'- gCGAGgGCGAGGAcgcGGCCgcgUCGUCcucGGCg -3'
miRNA:   3'- -GCUCaCGCUCUU---CUGGa--AGCGGu--UCG- -5'
23601 5' -52.5 NC_005261.1 + 21269 0.68 0.933384
Target:  5'- aCGAGcaCGAGGAcGGCCUguaCGCCAuGCu -3'
miRNA:   3'- -GCUCacGCUCUU-CUGGAa--GCGGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.