Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23601 | 5' | -52.5 | NC_005261.1 | + | 129740 | 0.67 | 0.951591 |
Target: 5'- aGGGcgGCGGGGcccGGCCUUCagcaccggcgaccGCCGGGCu -3' miRNA: 3'- gCUCa-CGCUCUu--CUGGAAG-------------CGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 88727 | 0.67 | 0.956052 |
Target: 5'- gGGGUGCGcgauGAGGGCCagcugguggaCGCCAugguGGCg -3' miRNA: 3'- gCUCACGCu---CUUCUGGaa--------GCGGU----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 40388 | 0.67 | 0.956052 |
Target: 5'- gGAGgaaGCGGGAGGACa--CGCUgcGCg -3' miRNA: 3'- gCUCa--CGCUCUUCUGgaaGCGGuuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 68089 | 0.67 | 0.956052 |
Target: 5'- gCGGGgGCGGGGAGGCCgugaaGuUCGGGCu -3' miRNA: 3'- -GCUCaCGCUCUUCUGGaag--C-GGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 34497 | 0.67 | 0.956052 |
Target: 5'- gGAGUGgguCGAGGgcgcucuggugGGcACCUUCGCCGugacGGCc -3' miRNA: 3'- gCUCAC---GCUCU-----------UC-UGGAAGCGGU----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 88466 | 0.67 | 0.956052 |
Target: 5'- aGcGUGUGGGcGGGCCgugccgCGCCgGAGCg -3' miRNA: 3'- gCuCACGCUCuUCUGGaa----GCGG-UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 112925 | 0.67 | 0.95874 |
Target: 5'- gCGAGgGCGAGGGcGGCgcgcucgccuucgaCUUCGCCGcGCu -3' miRNA: 3'- -GCUCaCGCUCUU-CUG--------------GAAGCGGUuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 39792 | 0.67 | 0.959857 |
Target: 5'- cCGGGggGCGGcgcGGCCgccggCGCCAGGCu -3' miRNA: 3'- -GCUCa-CGCUcuuCUGGaa---GCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 103624 | 0.67 | 0.959857 |
Target: 5'- gGAG-GCGGcGgcGGCCaUCGCCucgAAGCg -3' miRNA: 3'- gCUCaCGCU-CuuCUGGaAGCGG---UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 129396 | 0.67 | 0.966772 |
Target: 5'- cCGGGcUGUGAGAcGGCCgcgacgCGCaauaAAGCg -3' miRNA: 3'- -GCUC-ACGCUCUuCUGGaa----GCGg---UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 9140 | 0.67 | 0.966772 |
Target: 5'- gCGGGUGC-AGGcaaaucgggcugGGACCUggCGCCGcccGGCc -3' miRNA: 3'- -GCUCACGcUCU------------UCUGGAa-GCGGU---UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 23482 | 0.67 | 0.966772 |
Target: 5'- gCGAGUGCGc--GGGCC--CGCCuGGGCa -3' miRNA: 3'- -GCUCACGCucuUCUGGaaGCGG-UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 93432 | 0.67 | 0.966772 |
Target: 5'- gCGAuGUGCuuGAGGGCCgUgGCCA-GCa -3' miRNA: 3'- -GCU-CACGcuCUUCUGGaAgCGGUuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 108631 | 0.66 | 0.969894 |
Target: 5'- cCGAGU-CGGcaaucuccgcGAAGGCCUcCGCCAgccccGGCg -3' miRNA: 3'- -GCUCAcGCU----------CUUCUGGAaGCGGU-----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 69881 | 0.66 | 0.969894 |
Target: 5'- cCGGGcGCGAGuguguGugUUUUGCCGggGGCg -3' miRNA: 3'- -GCUCaCGCUCuu---CugGAAGCGGU--UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 131677 | 0.66 | 0.972519 |
Target: 5'- aGGGUGCGAccgcccugcgcgcGGcgcuGGACCgccucgagaGCCAGGCg -3' miRNA: 3'- gCUCACGCU-------------CU----UCUGGaag------CGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 35288 | 0.66 | 0.9728 |
Target: 5'- uGAGggagGaCGAGAAGAg---CGCCGGGCc -3' miRNA: 3'- gCUCa---C-GCUCUUCUggaaGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 13302 | 0.66 | 0.975498 |
Target: 5'- gGuGUGCGAcGggGGCCU-CGUacgcAGCg -3' miRNA: 3'- gCuCACGCU-CuuCUGGAaGCGgu--UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 72550 | 0.66 | 0.975498 |
Target: 5'- aGGGgacggGCGAGGAaaaaacGCCgggCGCCGAGUc -3' miRNA: 3'- gCUCa----CGCUCUUc-----UGGaa-GCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 18121 | 0.66 | 0.975498 |
Target: 5'- aCGAGcgGgGGGAagcagccgcAGGCCcagUCGCCGauGGCg -3' miRNA: 3'- -GCUCa-CgCUCU---------UCUGGa--AGCGGU--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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