miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 129396 0.67 0.966772
Target:  5'- cCGGGcUGUGAGAcGGCCgcgacgCGCaauaAAGCg -3'
miRNA:   3'- -GCUC-ACGCUCUuCUGGaa----GCGg---UUCG- -5'
23601 5' -52.5 NC_005261.1 + 103624 0.67 0.959857
Target:  5'- gGAG-GCGGcGgcGGCCaUCGCCucgAAGCg -3'
miRNA:   3'- gCUCaCGCU-CuuCUGGaAGCGG---UUCG- -5'
23601 5' -52.5 NC_005261.1 + 39792 0.67 0.959857
Target:  5'- cCGGGggGCGGcgcGGCCgccggCGCCAGGCu -3'
miRNA:   3'- -GCUCa-CGCUcuuCUGGaa---GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 112925 0.67 0.95874
Target:  5'- gCGAGgGCGAGGGcGGCgcgcucgccuucgaCUUCGCCGcGCu -3'
miRNA:   3'- -GCUCaCGCUCUU-CUG--------------GAAGCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 88466 0.67 0.956052
Target:  5'- aGcGUGUGGGcGGGCCgugccgCGCCgGAGCg -3'
miRNA:   3'- gCuCACGCUCuUCUGGaa----GCGG-UUCG- -5'
23601 5' -52.5 NC_005261.1 + 34497 0.67 0.956052
Target:  5'- gGAGUGgguCGAGGgcgcucuggugGGcACCUUCGCCGugacGGCc -3'
miRNA:   3'- gCUCAC---GCUCU-----------UC-UGGAAGCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 68089 0.67 0.956052
Target:  5'- gCGGGgGCGGGGAGGCCgugaaGuUCGGGCu -3'
miRNA:   3'- -GCUCaCGCUCUUCUGGaag--C-GGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 40388 0.67 0.956052
Target:  5'- gGAGgaaGCGGGAGGACa--CGCUgcGCg -3'
miRNA:   3'- gCUCa--CGCUCUUCUGgaaGCGGuuCG- -5'
23601 5' -52.5 NC_005261.1 + 88727 0.67 0.956052
Target:  5'- gGGGUGCGcgauGAGGGCCagcugguggaCGCCAugguGGCg -3'
miRNA:   3'- gCUCACGCu---CUUCUGGaa--------GCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 129740 0.67 0.951591
Target:  5'- aGGGcgGCGGGGcccGGCCUUCagcaccggcgaccGCCGGGCu -3'
miRNA:   3'- gCUCa-CGCUCUu--CUGGAAG-------------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 43430 0.68 0.947724
Target:  5'- cCGccgGCGGGGAGcuggcucggcGCCUggacgUCGCCGGGCg -3'
miRNA:   3'- -GCucaCGCUCUUC----------UGGA-----AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 13443 0.68 0.947724
Target:  5'- cCGGGUGCaGGcAGGCCggCGCCucggGGUg -3'
miRNA:   3'- -GCUCACGcUCuUCUGGaaGCGGu---UCG- -5'
23601 5' -52.5 NC_005261.1 + 87 0.68 0.943193
Target:  5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3'
miRNA:   3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5'
23601 5' -52.5 NC_005261.1 + 1016 0.68 0.943193
Target:  5'- gCGGGggGCGGGuGGGCUUUUGCgGAGg -3'
miRNA:   3'- -GCUCa-CGCUCuUCUGGAAGCGgUUCg -5'
23601 5' -52.5 NC_005261.1 + 136206 0.68 0.943193
Target:  5'- aGGGaGCGAGGAGGCaaaaCGCCAuccggggacuagAGCg -3'
miRNA:   3'- gCUCaCGCUCUUCUGgaa-GCGGU------------UCG- -5'
23601 5' -52.5 NC_005261.1 + 137770 0.68 0.943193
Target:  5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3'
miRNA:   3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5'
23601 5' -52.5 NC_005261.1 + 34586 0.68 0.943193
Target:  5'- cCGAGUGCGGcuucgacgacGAcGGCCUg-GCCGAcGCg -3'
miRNA:   3'- -GCUCACGCU----------CUuCUGGAagCGGUU-CG- -5'
23601 5' -52.5 NC_005261.1 + 117273 0.68 0.938414
Target:  5'- uCGAGgacgGCGA----GCCUggCGCCGAGCc -3'
miRNA:   3'- -GCUCa---CGCUcuucUGGAa-GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 58575 0.68 0.938414
Target:  5'- gCGAGcgGCGAGcgcGAGACCUUgaucaccucccCGCCAAa- -3'
miRNA:   3'- -GCUCa-CGCUC---UUCUGGAA-----------GCGGUUcg -5'
23601 5' -52.5 NC_005261.1 + 81356 0.68 0.933899
Target:  5'- gCGGGggcuUGCGGGggGcGCCgggcucgcugggggCGCCGGGCu -3'
miRNA:   3'- -GCUC----ACGCUCuuC-UGGaa------------GCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.