miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 87 0.68 0.943193
Target:  5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3'
miRNA:   3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5'
23601 5' -52.5 NC_005261.1 + 1016 0.68 0.943193
Target:  5'- gCGGGggGCGGGuGGGCUUUUGCgGAGg -3'
miRNA:   3'- -GCUCa-CGCUCuUCUGGAAGCGgUUCg -5'
23601 5' -52.5 NC_005261.1 + 6235 0.68 0.928103
Target:  5'- -aGGUGCGcccggGGAGGGCCUgccCGCCccgcgGGGCg -3'
miRNA:   3'- gcUCACGC-----UCUUCUGGAa--GCGG-----UUCG- -5'
23601 5' -52.5 NC_005261.1 + 6434 0.69 0.891155
Target:  5'- gCGAGgGCGGuccGggGGCCg--GCCGGGCu -3'
miRNA:   3'- -GCUCaCGCU---CuuCUGGaagCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 9140 0.67 0.966772
Target:  5'- gCGGGUGC-AGGcaaaucgggcugGGACCUggCGCCGcccGGCc -3'
miRNA:   3'- -GCUCACGcUCU------------UCUGGAa-GCGGU---UCG- -5'
23601 5' -52.5 NC_005261.1 + 11752 0.7 0.876889
Target:  5'- gCGAgcGUGCGAGAuccgaucagagAGGCCUuuauUUGCgGGGCg -3'
miRNA:   3'- -GCU--CACGCUCU-----------UCUGGA----AGCGgUUCG- -5'
23601 5' -52.5 NC_005261.1 + 13302 0.66 0.975498
Target:  5'- gGuGUGCGAcGggGGCCU-CGUacgcAGCg -3'
miRNA:   3'- gCuCACGCU-CuuCUGGAaGCGgu--UCG- -5'
23601 5' -52.5 NC_005261.1 + 13443 0.68 0.947724
Target:  5'- cCGGGUGCaGGcAGGCCggCGCCucggGGUg -3'
miRNA:   3'- -GCUCACGcUCuUCUGGaaGCGGu---UCG- -5'
23601 5' -52.5 NC_005261.1 + 14696 0.69 0.891155
Target:  5'- -uGGUgGCGAGggGgggcGCCUUCGgCCGAGa -3'
miRNA:   3'- gcUCA-CGCUCuuC----UGGAAGC-GGUUCg -5'
23601 5' -52.5 NC_005261.1 + 18121 0.66 0.975498
Target:  5'- aCGAGcgGgGGGAagcagccgcAGGCCcagUCGCCGauGGCg -3'
miRNA:   3'- -GCUCa-CgCUCU---------UCUGGa--AGCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 21269 0.68 0.933384
Target:  5'- aCGAGcaCGAGGAcGGCCUguaCGCCAuGCu -3'
miRNA:   3'- -GCUCacGCUCUU-CUGGAa--GCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 22717 0.71 0.84564
Target:  5'- uCGAGgaGCcGGAGGACCagCGCCAgucgGGCg -3'
miRNA:   3'- -GCUCa-CGcUCUUCUGGaaGCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 23482 0.67 0.966772
Target:  5'- gCGAGUGCGc--GGGCC--CGCCuGGGCa -3'
miRNA:   3'- -GCUCACGCucuUCUGGaaGCGG-UUCG- -5'
23601 5' -52.5 NC_005261.1 + 24311 0.7 0.861701
Target:  5'- aGGGUGgGGGGgggggcAGGCCca-GCCGAGCu -3'
miRNA:   3'- gCUCACgCUCU------UCUGGaagCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 27470 0.69 0.891155
Target:  5'- gCGGG-GCGGGcAGGCCcUCcCCGGGCg -3'
miRNA:   3'- -GCUCaCGCUCuUCUGGaAGcGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 28578 0.72 0.773886
Target:  5'- cCGAGgcgcGCGAGcgccggcGGGCCgcccgCGCCGAGCu -3'
miRNA:   3'- -GCUCa---CGCUCu------UCUGGaa---GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 29390 0.69 0.897931
Target:  5'- cCGAGauccGCGAGgcGGCCgcgCGCUAcGCg -3'
miRNA:   3'- -GCUCa---CGCUCuuCUGGaa-GCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 30356 0.68 0.92257
Target:  5'- ----cGCGGcccuGAAGGCCggcgCGCCGGGCg -3'
miRNA:   3'- gcucaCGCU----CUUCUGGaa--GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 30704 0.69 0.910748
Target:  5'- gGAGgcccGCGGGAGccCCggCGCCGGGCc -3'
miRNA:   3'- gCUCa---CGCUCUUcuGGaaGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 33719 0.69 0.888377
Target:  5'- aCGAGggGCGGuGggGGCCUgccccucgcgcggCGCCGGGg -3'
miRNA:   3'- -GCUCa-CGCU-CuuCUGGAa------------GCGGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.