miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 34497 0.67 0.956052
Target:  5'- gGAGUGgguCGAGGgcgcucuggugGGcACCUUCGCCGugacGGCc -3'
miRNA:   3'- gCUCAC---GCUCU-----------UC-UGGAAGCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 34586 0.68 0.943193
Target:  5'- cCGAGUGCGGcuucgacgacGAcGGCCUg-GCCGAcGCg -3'
miRNA:   3'- -GCUCACGCU----------CUuCUGGAagCGGUU-CG- -5'
23601 5' -52.5 NC_005261.1 + 35288 0.66 0.9728
Target:  5'- uGAGggagGaCGAGAAGAg---CGCCGGGCc -3'
miRNA:   3'- gCUCa---C-GCUCUUCUggaaGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 35880 0.76 0.557792
Target:  5'- uGGGUGCGAGAacgccuccuaaAGACCccCGCCGcGGCa -3'
miRNA:   3'- gCUCACGCUCU-----------UCUGGaaGCGGU-UCG- -5'
23601 5' -52.5 NC_005261.1 + 38664 0.7 0.88414
Target:  5'- gCGGGUGCGGGcccGGGCC--CGCCAGucucGCg -3'
miRNA:   3'- -GCUCACGCUCu--UCUGGaaGCGGUU----CG- -5'
23601 5' -52.5 NC_005261.1 + 39792 0.67 0.959857
Target:  5'- cCGGGggGCGGcgcGGCCgccggCGCCAGGCu -3'
miRNA:   3'- -GCUCa-CGCUcuuCUGGaa---GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 40388 0.67 0.956052
Target:  5'- gGAGgaaGCGGGAGGACa--CGCUgcGCg -3'
miRNA:   3'- gCUCa--CGCUCUUCUGgaaGCGGuuCG- -5'
23601 5' -52.5 NC_005261.1 + 43430 0.68 0.947724
Target:  5'- cCGccgGCGGGGAGcuggcucggcGCCUggacgUCGCCGGGCg -3'
miRNA:   3'- -GCucaCGCUCUUC----------UGGA-----AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 43482 0.75 0.620365
Target:  5'- gGAGUGCGAGGccuucgcggcGGACCUccugcgcugCGCCA-GCg -3'
miRNA:   3'- gCUCACGCUCU----------UCUGGAa--------GCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 43847 0.68 0.928103
Target:  5'- gCGAGgGCGAGGAcgcGGCCgcgUCGUCcucGGCg -3'
miRNA:   3'- -GCUCaCGCUCUU---CUGGa--AGCGGu--UCG- -5'
23601 5' -52.5 NC_005261.1 + 44900 0.66 0.977995
Target:  5'- cCGGG-GCGuacacGGACCcaCGCCGGGCc -3'
miRNA:   3'- -GCUCaCGCucu--UCUGGaaGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 45187 0.74 0.697767
Target:  5'- cCGAGUGUGAGGccaugccggccuuccGGGgCUUCGCCuucGCg -3'
miRNA:   3'- -GCUCACGCUCU---------------UCUgGAAGCGGuu-CG- -5'
23601 5' -52.5 NC_005261.1 + 46865 0.66 0.977995
Target:  5'- aGGGUGgGgaAGAAGGCCgagaagUCgaacuuggccaGCCAGGCc -3'
miRNA:   3'- gCUCACgC--UCUUCUGGa-----AG-----------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 49122 0.66 0.977995
Target:  5'- uCGAGcgcgGCGGGcGGGACCcccgCGCgCAGGUa -3'
miRNA:   3'- -GCUCa---CGCUC-UUCUGGaa--GCG-GUUCG- -5'
23601 5' -52.5 NC_005261.1 + 49210 0.76 0.568126
Target:  5'- gCGAGgGCG-GGAGGCCggCGCCcAGCg -3'
miRNA:   3'- -GCUCaCGCuCUUCUGGaaGCGGuUCG- -5'
23601 5' -52.5 NC_005261.1 + 58575 0.68 0.938414
Target:  5'- gCGAGcgGCGAGcgcGAGACCUUgaucaccucccCGCCAAa- -3'
miRNA:   3'- -GCUCa-CGCUC---UUCUGGAA-----------GCGGUUcg -5'
23601 5' -52.5 NC_005261.1 + 62427 0.66 0.975498
Target:  5'- cCGAGgccaGCGcGA--GCCggUCGCCGGGCc -3'
miRNA:   3'- -GCUCa---CGCuCUucUGGa-AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 68089 0.67 0.956052
Target:  5'- gCGGGgGCGGGGAGGCCgugaaGuUCGGGCu -3'
miRNA:   3'- -GCUCaCGCUCUUCUGGaag--C-GGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 68952 0.71 0.837299
Target:  5'- aCGAGgcGCGcGggGACCUggugcgCGCCAccgcGGCc -3'
miRNA:   3'- -GCUCa-CGCuCuuCUGGAa-----GCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 69881 0.66 0.969894
Target:  5'- cCGGGcGCGAGuguguGugUUUUGCCGggGGCg -3'
miRNA:   3'- -GCUCaCGCUCuu---CugGAAGCGGU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.