miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 137770 0.68 0.943193
Target:  5'- gGGGUGCGGGGcgcgcccccGGGCCc-CGCCGcccgcgccGGCg -3'
miRNA:   3'- gCUCACGCUCU---------UCUGGaaGCGGU--------UCG- -5'
23601 5' -52.5 NC_005261.1 + 137042 0.66 0.977995
Target:  5'- -cGGUG-GAGGgcGGACCgUCGgCAGGCg -3'
miRNA:   3'- gcUCACgCUCU--UCUGGaAGCgGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 136629 0.81 0.314287
Target:  5'- cCGAGggcgGCGGGAAGGCCUggucCGCCugGAGCu -3'
miRNA:   3'- -GCUCa---CGCUCUUCUGGAa---GCGG--UUCG- -5'
23601 5' -52.5 NC_005261.1 + 136206 0.68 0.943193
Target:  5'- aGGGaGCGAGGAGGCaaaaCGCCAuccggggacuagAGCg -3'
miRNA:   3'- gCUCaCGCUCUUCUGgaa-GCGGU------------UCG- -5'
23601 5' -52.5 NC_005261.1 + 135207 0.77 0.517058
Target:  5'- cCGAGgcgGCGcAGAGGGCCacgGCCGAGCg -3'
miRNA:   3'- -GCUCa--CGC-UCUUCUGGaagCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 132673 0.7 0.852972
Target:  5'- uGGGUGCGAGGacaagauGGGCUUcCGCguGGCc -3'
miRNA:   3'- gCUCACGCUCU-------UCUGGAaGCGguUCG- -5'
23601 5' -52.5 NC_005261.1 + 131677 0.66 0.972519
Target:  5'- aGGGUGCGAccgcccugcgcgcGGcgcuGGACCgccucgagaGCCAGGCg -3'
miRNA:   3'- gCUCACGCU-------------CU----UCUGGaag------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 131075 0.66 0.977267
Target:  5'- --cGUGCGGGAcuGCCUggccacguacgccgUCGCCGcGCc -3'
miRNA:   3'- gcuCACGCUCUucUGGA--------------AGCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 129740 0.67 0.951591
Target:  5'- aGGGcgGCGGGGcccGGCCUUCagcaccggcgaccGCCGGGCu -3'
miRNA:   3'- gCUCa-CGCUCUu--CUGGAAG-------------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 129396 0.67 0.966772
Target:  5'- cCGGGcUGUGAGAcGGCCgcgacgCGCaauaAAGCg -3'
miRNA:   3'- -GCUC-ACGCUCUuCUGGaa----GCGg---UUCG- -5'
23601 5' -52.5 NC_005261.1 + 128129 0.73 0.724404
Target:  5'- cCGAGUGCgGAGAGaggcGACggUCGCCGGGg -3'
miRNA:   3'- -GCUCACG-CUCUU----CUGgaAGCGGUUCg -5'
23601 5' -52.5 NC_005261.1 + 121407 0.69 0.897931
Target:  5'- cCGAGUGCGAcGGcuGCCgcCGCCGcuacggGGCg -3'
miRNA:   3'- -GCUCACGCU-CUucUGGaaGCGGU------UCG- -5'
23601 5' -52.5 NC_005261.1 + 121142 0.72 0.792814
Target:  5'- gCGAGcGCGAGuAGGACCggguagggUUGcCCGGGCg -3'
miRNA:   3'- -GCUCaCGCUC-UUCUGGa-------AGC-GGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 119582 0.7 0.853776
Target:  5'- gCGAGcGCGAGAccguGGCCgccccguaUGCCGAGCc -3'
miRNA:   3'- -GCUCaCGCUCUu---CUGGaa------GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 117273 0.68 0.938414
Target:  5'- uCGAGgacgGCGA----GCCUggCGCCGAGCc -3'
miRNA:   3'- -GCUCa---CGCUcuucUGGAa-GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 115999 0.66 0.980299
Target:  5'- aCGAGccgccCGAGgcGGCCUgagcCGCCGacGGCg -3'
miRNA:   3'- -GCUCac---GCUCuuCUGGAa---GCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 112925 0.67 0.95874
Target:  5'- gCGAGgGCGAGGGcGGCgcgcucgccuucgaCUUCGCCGcGCu -3'
miRNA:   3'- -GCUCaCGCUCUU-CUG--------------GAAGCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 108631 0.66 0.969894
Target:  5'- cCGAGU-CGGcaaucuccgcGAAGGCCUcCGCCAgccccGGCg -3'
miRNA:   3'- -GCUCAcGCU----------CUUCUGGAaGCGGU-----UCG- -5'
23601 5' -52.5 NC_005261.1 + 105385 0.66 0.977995
Target:  5'- gCGGGUGCGcGcuGACCacgCGCCGcucgacguagGGCu -3'
miRNA:   3'- -GCUCACGCuCuuCUGGaa-GCGGU----------UCG- -5'
23601 5' -52.5 NC_005261.1 + 103624 0.67 0.959857
Target:  5'- gGAG-GCGGcGgcGGCCaUCGCCucgAAGCg -3'
miRNA:   3'- gCUCaCGCU-CuuCUGGaAGCGG---UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.