miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23601 5' -52.5 NC_005261.1 + 94732 0.66 0.977995
Target:  5'- cCGGG-GCGGGGAcACCgaCGCCGAcGUg -3'
miRNA:   3'- -GCUCaCGCUCUUcUGGaaGCGGUU-CG- -5'
23601 5' -52.5 NC_005261.1 + 93432 0.67 0.966772
Target:  5'- gCGAuGUGCuuGAGGGCCgUgGCCA-GCa -3'
miRNA:   3'- -GCU-CACGcuCUUCUGGaAgCGGUuCG- -5'
23601 5' -52.5 NC_005261.1 + 92793 0.66 0.980299
Target:  5'- gGGGU-CGGGGu--CCggUCGCCGGGCg -3'
miRNA:   3'- gCUCAcGCUCUucuGGa-AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 90945 1.12 0.003681
Target:  5'- uCGAGUGCGAGAAGACCUUCGCCAAGCu -3'
miRNA:   3'- -GCUCACGCUCUUCUGGAAGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 90082 0.72 0.802053
Target:  5'- cCGAGggcaGCGAcGggGGCCcgUUCGCC-GGCu -3'
miRNA:   3'- -GCUCa---CGCU-CuuCUGG--AAGCGGuUCG- -5'
23601 5' -52.5 NC_005261.1 + 88727 0.67 0.956052
Target:  5'- gGGGUGCGcgauGAGGGCCagcugguggaCGCCAugguGGCg -3'
miRNA:   3'- gCUCACGCu---CUUCUGGaa--------GCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 88466 0.67 0.956052
Target:  5'- aGcGUGUGGGcGGGCCgugccgCGCCgGAGCg -3'
miRNA:   3'- gCuCACGCUCuUCUGGaa----GCGG-UUCG- -5'
23601 5' -52.5 NC_005261.1 + 81356 0.68 0.933899
Target:  5'- gCGGGggcuUGCGGGggGcGCCgggcucgcugggggCGCCGGGCu -3'
miRNA:   3'- -GCUC----ACGCUCuuC-UGGaa------------GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 72550 0.66 0.975498
Target:  5'- aGGGgacggGCGAGGAaaaaacGCCgggCGCCGAGUc -3'
miRNA:   3'- gCUCa----CGCUCUUc-----UGGaa-GCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 72472 0.71 0.828762
Target:  5'- gCGAGcGCGAGcgcGGCCagCGCCAggAGCg -3'
miRNA:   3'- -GCUCaCGCUCuu-CUGGaaGCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 69881 0.66 0.969894
Target:  5'- cCGGGcGCGAGuguguGugUUUUGCCGggGGCg -3'
miRNA:   3'- -GCUCaCGCUCuu---CugGAAGCGGU--UCG- -5'
23601 5' -52.5 NC_005261.1 + 68952 0.71 0.837299
Target:  5'- aCGAGgcGCGcGggGACCUggugcgCGCCAccgcGGCc -3'
miRNA:   3'- -GCUCa-CGCuCuuCUGGAa-----GCGGU----UCG- -5'
23601 5' -52.5 NC_005261.1 + 68089 0.67 0.956052
Target:  5'- gCGGGgGCGGGGAGGCCgugaaGuUCGGGCu -3'
miRNA:   3'- -GCUCaCGCUCUUCUGGaag--C-GGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 62427 0.66 0.975498
Target:  5'- cCGAGgccaGCGcGA--GCCggUCGCCGGGCc -3'
miRNA:   3'- -GCUCa---CGCuCUucUGGa-AGCGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 58575 0.68 0.938414
Target:  5'- gCGAGcgGCGAGcgcGAGACCUUgaucaccucccCGCCAAa- -3'
miRNA:   3'- -GCUCa-CGCUC---UUCUGGAA-----------GCGGUUcg -5'
23601 5' -52.5 NC_005261.1 + 49210 0.76 0.568126
Target:  5'- gCGAGgGCG-GGAGGCCggCGCCcAGCg -3'
miRNA:   3'- -GCUCaCGCuCUUCUGGaaGCGGuUCG- -5'
23601 5' -52.5 NC_005261.1 + 49122 0.66 0.977995
Target:  5'- uCGAGcgcgGCGGGcGGGACCcccgCGCgCAGGUa -3'
miRNA:   3'- -GCUCa---CGCUC-UUCUGGaa--GCG-GUUCG- -5'
23601 5' -52.5 NC_005261.1 + 46865 0.66 0.977995
Target:  5'- aGGGUGgGgaAGAAGGCCgagaagUCgaacuuggccaGCCAGGCc -3'
miRNA:   3'- gCUCACgC--UCUUCUGGa-----AG-----------CGGUUCG- -5'
23601 5' -52.5 NC_005261.1 + 45187 0.74 0.697767
Target:  5'- cCGAGUGUGAGGccaugccggccuuccGGGgCUUCGCCuucGCg -3'
miRNA:   3'- -GCUCACGCUCU---------------UCUgGAAGCGGuu-CG- -5'
23601 5' -52.5 NC_005261.1 + 44900 0.66 0.977995
Target:  5'- cCGGG-GCGuacacGGACCcaCGCCGGGCc -3'
miRNA:   3'- -GCUCaCGCucu--UCUGGaaGCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.