Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23601 | 5' | -52.5 | NC_005261.1 | + | 90945 | 1.12 | 0.003681 |
Target: 5'- uCGAGUGCGAGAAGACCUUCGCCAAGCu -3' miRNA: 3'- -GCUCACGCUCUUCUGGAAGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 13302 | 0.66 | 0.975498 |
Target: 5'- gGuGUGCGAcGggGGCCU-CGUacgcAGCg -3' miRNA: 3'- gCuCACGCU-CuuCUGGAaGCGgu--UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 35288 | 0.66 | 0.9728 |
Target: 5'- uGAGggagGaCGAGAAGAg---CGCCGGGCc -3' miRNA: 3'- gCUCa---C-GCUCUUCUggaaGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 131677 | 0.66 | 0.972519 |
Target: 5'- aGGGUGCGAccgcccugcgcgcGGcgcuGGACCgccucgagaGCCAGGCg -3' miRNA: 3'- gCUCACGCU-------------CU----UCUGGaag------CGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 108631 | 0.66 | 0.969894 |
Target: 5'- cCGAGU-CGGcaaucuccgcGAAGGCCUcCGCCAgccccGGCg -3' miRNA: 3'- -GCUCAcGCU----------CUUCUGGAaGCGGU-----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 69881 | 0.66 | 0.969894 |
Target: 5'- cCGGGcGCGAGuguguGugUUUUGCCGggGGCg -3' miRNA: 3'- -GCUCaCGCUCuu---CugGAAGCGGU--UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 129396 | 0.67 | 0.966772 |
Target: 5'- cCGGGcUGUGAGAcGGCCgcgacgCGCaauaAAGCg -3' miRNA: 3'- -GCUC-ACGCUCUuCUGGaa----GCGg---UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 93432 | 0.67 | 0.966772 |
Target: 5'- gCGAuGUGCuuGAGGGCCgUgGCCA-GCa -3' miRNA: 3'- -GCU-CACGcuCUUCUGGaAgCGGUuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 23482 | 0.67 | 0.966772 |
Target: 5'- gCGAGUGCGc--GGGCC--CGCCuGGGCa -3' miRNA: 3'- -GCUCACGCucuUCUGGaaGCGG-UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 72550 | 0.66 | 0.975498 |
Target: 5'- aGGGgacggGCGAGGAaaaaacGCCgggCGCCGAGUc -3' miRNA: 3'- gCUCa----CGCUCUUc-----UGGaa-GCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 18121 | 0.66 | 0.975498 |
Target: 5'- aCGAGcgGgGGGAagcagccgcAGGCCcagUCGCCGauGGCg -3' miRNA: 3'- -GCUCa-CgCUCU---------UCUGGa--AGCGGU--UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 62427 | 0.66 | 0.975498 |
Target: 5'- cCGAGgccaGCGcGA--GCCggUCGCCGGGCc -3' miRNA: 3'- -GCUCa---CGCuCUucUGGa-AGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 92793 | 0.66 | 0.980299 |
Target: 5'- gGGGU-CGGGGu--CCggUCGCCGGGCg -3' miRNA: 3'- gCUCAcGCUCUucuGGa-AGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 94732 | 0.66 | 0.977995 |
Target: 5'- cCGGG-GCGGGGAcACCgaCGCCGAcGUg -3' miRNA: 3'- -GCUCaCGCUCUUcUGGaaGCGGUU-CG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 44900 | 0.66 | 0.977995 |
Target: 5'- cCGGG-GCGuacacGGACCcaCGCCGGGCc -3' miRNA: 3'- -GCUCaCGCucu--UCUGGaaGCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 137042 | 0.66 | 0.977995 |
Target: 5'- -cGGUG-GAGGgcGGACCgUCGgCAGGCg -3' miRNA: 3'- gcUCACgCUCU--UCUGGaAGCgGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 105385 | 0.66 | 0.977995 |
Target: 5'- gCGGGUGCGcGcuGACCacgCGCCGcucgacguagGGCu -3' miRNA: 3'- -GCUCACGCuCuuCUGGaa-GCGGU----------UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 49122 | 0.66 | 0.977995 |
Target: 5'- uCGAGcgcgGCGGGcGGGACCcccgCGCgCAGGUa -3' miRNA: 3'- -GCUCa---CGCUC-UUCUGGaa--GCG-GUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 46865 | 0.66 | 0.977995 |
Target: 5'- aGGGUGgGgaAGAAGGCCgagaagUCgaacuuggccaGCCAGGCc -3' miRNA: 3'- gCUCACgC--UCUUCUGGa-----AG-----------CGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 131075 | 0.66 | 0.977267 |
Target: 5'- --cGUGCGGGAcuGCCUggccacguacgccgUCGCCGcGCc -3' miRNA: 3'- gcuCACGCUCUucUGGA--------------AGCGGUuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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