Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23601 | 5' | -52.5 | NC_005261.1 | + | 34497 | 0.67 | 0.956052 |
Target: 5'- gGAGUGgguCGAGGgcgcucuggugGGcACCUUCGCCGugacGGCc -3' miRNA: 3'- gCUCAC---GCUCU-----------UC-UGGAAGCGGU----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 68089 | 0.67 | 0.956052 |
Target: 5'- gCGGGgGCGGGGAGGCCgugaaGuUCGGGCu -3' miRNA: 3'- -GCUCaCGCUCUUCUGGaag--C-GGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 40388 | 0.67 | 0.956052 |
Target: 5'- gGAGgaaGCGGGAGGACa--CGCUgcGCg -3' miRNA: 3'- gCUCa--CGCUCUUCUGgaaGCGGuuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 88727 | 0.67 | 0.956052 |
Target: 5'- gGGGUGCGcgauGAGGGCCagcugguggaCGCCAugguGGCg -3' miRNA: 3'- gCUCACGCu---CUUCUGGaa--------GCGGU----UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 112925 | 0.67 | 0.95874 |
Target: 5'- gCGAGgGCGAGGGcGGCgcgcucgccuucgaCUUCGCCGcGCu -3' miRNA: 3'- -GCUCaCGCUCUU-CUG--------------GAAGCGGUuCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 39792 | 0.67 | 0.959857 |
Target: 5'- cCGGGggGCGGcgcGGCCgccggCGCCAGGCu -3' miRNA: 3'- -GCUCa-CGCUcuuCUGGaa---GCGGUUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 103624 | 0.67 | 0.959857 |
Target: 5'- gGAG-GCGGcGgcGGCCaUCGCCucgAAGCg -3' miRNA: 3'- gCUCaCGCU-CuuCUGGaAGCGG---UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 9140 | 0.67 | 0.966772 |
Target: 5'- gCGGGUGC-AGGcaaaucgggcugGGACCUggCGCCGcccGGCc -3' miRNA: 3'- -GCUCACGcUCU------------UCUGGAa-GCGGU---UCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 23482 | 0.67 | 0.966772 |
Target: 5'- gCGAGUGCGc--GGGCC--CGCCuGGGCa -3' miRNA: 3'- -GCUCACGCucuUCUGGaaGCGG-UUCG- -5' |
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23601 | 5' | -52.5 | NC_005261.1 | + | 115999 | 0.66 | 0.980299 |
Target: 5'- aCGAGccgccCGAGgcGGCCUgagcCGCCGacGGCg -3' miRNA: 3'- -GCUCac---GCUCuuCUGGAa---GCGGU--UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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