miRNA display CGI


Results 21 - 40 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 3' -65.1 NC_005261.1 + 32113 0.66 0.500323
Target:  5'- -gGCgaGGCGGCCaGCcacCGCGCcgccaACCGCu -3'
miRNA:   3'- gaCG--CCGCCGGcCGc--GCGCGa----UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 56157 0.66 0.500323
Target:  5'- -gGUGGCGGCagCGGCG-GgGC--CCGCg -3'
miRNA:   3'- gaCGCCGCCG--GCCGCgCgCGauGGCG- -5'
23602 3' -65.1 NC_005261.1 + 61231 0.66 0.500323
Target:  5'- gCU-CGGCGuuCGGCGCGagcucgacuCGCUgGCCGCc -3'
miRNA:   3'- -GAcGCCGCcgGCCGCGC---------GCGA-UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 106257 0.66 0.500323
Target:  5'- ---gGGCcGCCGcCGC-CGCUGCCGCc -3'
miRNA:   3'- gacgCCGcCGGCcGCGcGCGAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 130265 0.66 0.500323
Target:  5'- aCUGCGG-GGCguccCGCGCGCccCCGCc -3'
miRNA:   3'- -GACGCCgCCGgcc-GCGCGCGauGGCG- -5'
23602 3' -65.1 NC_005261.1 + 36636 0.66 0.500323
Target:  5'- --aCGGCGcgaaGCCGGCGCGCggGCUugggGCCa- -3'
miRNA:   3'- gacGCCGC----CGGCCGCGCG--CGA----UGGcg -5'
23602 3' -65.1 NC_005261.1 + 61929 0.66 0.500323
Target:  5'- ---aGGUGcacaccuucGCCacggGGCGCGCGCcgACCGCg -3'
miRNA:   3'- gacgCCGC---------CGG----CCGCGCGCGa-UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 75810 0.66 0.500323
Target:  5'- --uCGGCacGCUGGUGCccgGCGCgGCCGCg -3'
miRNA:   3'- gacGCCGc-CGGCCGCG---CGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 109036 0.66 0.500323
Target:  5'- -cGUGGCGcGCa-GC-CGCGCgGCCGCc -3'
miRNA:   3'- gaCGCCGC-CGgcCGcGCGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 135098 0.66 0.500323
Target:  5'- --cCGGCGGCgGaGCGCGagGCggaccCCGCg -3'
miRNA:   3'- gacGCCGCCGgC-CGCGCg-CGau---GGCG- -5'
23602 3' -65.1 NC_005261.1 + 132103 0.66 0.49759
Target:  5'- ---gGGCGGCCGcgacGCGCucguggagcgggacGCGCggcugACCGCc -3'
miRNA:   3'- gacgCCGCCGGC----CGCG--------------CGCGa----UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 74159 0.66 0.494865
Target:  5'- -aGCGG-GGCauGCGCGUGCUcaaggugacgcgccuGCCGg -3'
miRNA:   3'- gaCGCCgCCGgcCGCGCGCGA---------------UGGCg -5'
23602 3' -65.1 NC_005261.1 + 133569 0.66 0.491241
Target:  5'- -gGgGGCGGaCGGCuaaccuugcCGCGCUGgCGCu -3'
miRNA:   3'- gaCgCCGCCgGCCGc--------GCGCGAUgGCG- -5'
23602 3' -65.1 NC_005261.1 + 133732 0.66 0.491241
Target:  5'- -cGgGGCGGCgCGGacaacgccaCGCGCGCgaucgaCGCc -3'
miRNA:   3'- gaCgCCGCCG-GCC---------GCGCGCGaug---GCG- -5'
23602 3' -65.1 NC_005261.1 + 12709 0.66 0.491241
Target:  5'- -aGCccgaGCGGCuCGG-GCGCGCgggcCCGCc -3'
miRNA:   3'- gaCGc---CGCCG-GCCgCGCGCGau--GGCG- -5'
23602 3' -65.1 NC_005261.1 + 13343 0.66 0.491241
Target:  5'- -cGCGGCcagcGGUCGGCGgaggcUGgGCggcACCGCu -3'
miRNA:   3'- gaCGCCG----CCGGCCGC-----GCgCGa--UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 32290 0.66 0.491241
Target:  5'- gUGCuGGaGGCgGGCGC-CGCccccGCCGCc -3'
miRNA:   3'- gACG-CCgCCGgCCGCGcGCGa---UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 85016 0.66 0.491241
Target:  5'- -cGCGG-GGUC-GCGCG-GCcGCCGCg -3'
miRNA:   3'- gaCGCCgCCGGcCGCGCgCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 88607 0.66 0.491241
Target:  5'- -gGCGGCGccaCGGuCGUGaCGCUGCUGg -3'
miRNA:   3'- gaCGCCGCcg-GCC-GCGC-GCGAUGGCg -5'
23602 3' -65.1 NC_005261.1 + 130319 0.66 0.491241
Target:  5'- gCUGCagcgccauGGaCGGcCCGGC-CGCGCUcggggacgcGCUGCg -3'
miRNA:   3'- -GACG--------CC-GCC-GGCCGcGCGCGA---------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.