miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 5' -54.8 NC_005261.1 + 13091 0.66 0.929805
Target:  5'- --uCGGCGGgcgGCGGGCUCGGcUCgggggcgUCGg -3'
miRNA:   3'- gauGCCGCUg--UGCCUGAGCC-AGa------AGC- -5'
23602 5' -54.8 NC_005261.1 + 50994 0.66 0.929805
Target:  5'- -gACGGCGGCGCguGGGCgcggCGGgagCU-CGg -3'
miRNA:   3'- gaUGCCGCUGUG--CCUGa---GCCa--GAaGC- -5'
23602 5' -54.8 NC_005261.1 + 42617 0.67 0.918966
Target:  5'- -cGCGGCGcaaaguccaGCGgGGACUCGGcCgccgCGg -3'
miRNA:   3'- gaUGCCGC---------UGUgCCUGAGCCaGaa--GC- -5'
23602 5' -54.8 NC_005261.1 + 74478 0.67 0.91319
Target:  5'- -cGCGGCGuGCcuggGCGGGauCUCGGcgcUCUUCGg -3'
miRNA:   3'- gaUGCCGC-UG----UGCCU--GAGCC---AGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 135450 0.67 0.907177
Target:  5'- ---aGGCGGCGCGGGCgcugCGGgaccUCGu -3'
miRNA:   3'- gaugCCGCUGUGCCUGa---GCCaga-AGC- -5'
23602 5' -54.8 NC_005261.1 + 129659 0.67 0.907177
Target:  5'- -gGCGGCGGCAgGGGCgggacCGGgggCgUCGc -3'
miRNA:   3'- gaUGCCGCUGUgCCUGa----GCCa--GaAGC- -5'
23602 5' -54.8 NC_005261.1 + 104991 0.67 0.900929
Target:  5'- --cCGGCGcccaGCGCGGGCggCGGUCggggCGc -3'
miRNA:   3'- gauGCCGC----UGUGCCUGa-GCCAGaa--GC- -5'
23602 5' -54.8 NC_005261.1 + 60057 0.67 0.900929
Target:  5'- -gGCGGCGAagaGCGGcgGC-CGGUCcgCGg -3'
miRNA:   3'- gaUGCCGCUg--UGCC--UGaGCCAGaaGC- -5'
23602 5' -54.8 NC_005261.1 + 36635 0.68 0.89445
Target:  5'- -aACGGCGcgaagccggcGCGCGGGCUUGGggccagggUCGa -3'
miRNA:   3'- gaUGCCGC----------UGUGCCUGAGCCaga-----AGC- -5'
23602 5' -54.8 NC_005261.1 + 74884 0.68 0.89445
Target:  5'- -gGCGGCGGCgGCGGAgUCGG-Cg--- -3'
miRNA:   3'- gaUGCCGCUG-UGCCUgAGCCaGaagc -5'
23602 5' -54.8 NC_005261.1 + 121438 0.68 0.89445
Target:  5'- -gGCGGCGGgGCGGGCaUGGggccgUCGa -3'
miRNA:   3'- gaUGCCGCUgUGCCUGaGCCaga--AGC- -5'
23602 5' -54.8 NC_005261.1 + 121501 0.68 0.89445
Target:  5'- -gGCGGCGGgGCGGGCaUGGggccgUCGa -3'
miRNA:   3'- gaUGCCGCUgUGCCUGaGCCaga--AGC- -5'
23602 5' -54.8 NC_005261.1 + 68059 0.68 0.887742
Target:  5'- uCUACGcG-GGCACGGugguCUCGGUCgcccgCGg -3'
miRNA:   3'- -GAUGC-CgCUGUGCCu---GAGCCAGaa---GC- -5'
23602 5' -54.8 NC_005261.1 + 49574 0.68 0.887742
Target:  5'- ---gGGCGugaACACGGGCUCGGggCgcgCGg -3'
miRNA:   3'- gaugCCGC---UGUGCCUGAGCCa-Gaa-GC- -5'
23602 5' -54.8 NC_005261.1 + 74576 0.68 0.880809
Target:  5'- -cGCGGU--CGCGGAC-CGcGUCUUCGu -3'
miRNA:   3'- gaUGCCGcuGUGCCUGaGC-CAGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 68283 0.68 0.86926
Target:  5'- -cGCGGCGgggccccggccgcggGCGCGGACcucugCGGccgCUUCGa -3'
miRNA:   3'- gaUGCCGC---------------UGUGCCUGa----GCCa--GAAGC- -5'
23602 5' -54.8 NC_005261.1 + 127643 0.68 0.866286
Target:  5'- -gGCGGCGGCGCcgggGGGCgcgCGGg-UUCGg -3'
miRNA:   3'- gaUGCCGCUGUG----CCUGa--GCCagAAGC- -5'
23602 5' -54.8 NC_005261.1 + 2967 0.68 0.866286
Target:  5'- aCUAgGGCccgggcugaGGCugGGGCUCGGcCUggCGg -3'
miRNA:   3'- -GAUgCCG---------CUGugCCUGAGCCaGAa-GC- -5'
23602 5' -54.8 NC_005261.1 + 125708 0.68 0.865538
Target:  5'- --cCGGCGACggccgccGCGGGCUCGG-CUggGg -3'
miRNA:   3'- gauGCCGCUG-------UGCCUGAGCCaGAagC- -5'
23602 5' -54.8 NC_005261.1 + 75581 0.69 0.842942
Target:  5'- -gGCGGCGGCGCGGcGCUCGcGcgCgccgCGg -3'
miRNA:   3'- gaUGCCGCUGUGCC-UGAGC-Ca-Gaa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.