miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 28099 0.66 0.797146
Target:  5'- cGCCGcagcaaagGGGUUagaggggGGGGCCuCGAGgCGGGc -3'
miRNA:   3'- -CGGU--------UCCAGga-----CCUCGG-GCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 113084 0.66 0.794513
Target:  5'- uCCAGGGccugcacacgcuccUCCUGGAGCUCGGcaUGGa -3'
miRNA:   3'- cGGUUCC--------------AGGACCUCGGGCUcaGCCc -5'
23603 3' -59.3 NC_005261.1 + 121106 0.66 0.78832
Target:  5'- gGCCGugcGGGUCCUcuaGGGCgCgGAGgcgCGGGc -3'
miRNA:   3'- -CGGU---UCCAGGAc--CUCG-GgCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 38457 0.66 0.78832
Target:  5'- uGCCGAGGccaacgcguUCCUGGAGCagcaCGGccgCGGcGg -3'
miRNA:   3'- -CGGUUCC---------AGGACCUCGg---GCUca-GCC-C- -5'
23603 3' -59.3 NC_005261.1 + 128325 0.66 0.78832
Target:  5'- aCCAGGG-CCUgcgGGGGCuCCGAGagCGGc -3'
miRNA:   3'- cGGUUCCaGGA---CCUCG-GGCUCa-GCCc -5'
23603 3' -59.3 NC_005261.1 + 16256 0.66 0.785646
Target:  5'- cGCCGGGG-CCgccgGGGccgggcuucggcucGCCCGGgggggcgccGUCGGGc -3'
miRNA:   3'- -CGGUUCCaGGa---CCU--------------CGGGCU---------CAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 128785 0.66 0.779361
Target:  5'- cGCCGuuGUCUgGGcGCCCGGGcccgcggCGGGg -3'
miRNA:   3'- -CGGUucCAGGaCCuCGGGCUCa------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 129697 0.66 0.779361
Target:  5'- gGCCGGGG-CC-GGGGCCgGAGgcaGGc -3'
miRNA:   3'- -CGGUUCCaGGaCCUCGGgCUCag-CCc -5'
23603 3' -59.3 NC_005261.1 + 117217 0.66 0.779361
Target:  5'- cGCCcgcugCCUGGGcgccgaguccGCCuCGGGUCGGGu -3'
miRNA:   3'- -CGGuuccaGGACCU----------CGG-GCUCAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 4998 0.66 0.751768
Target:  5'- cGCCGAGGcCCccGGGcccCCCGGGUucucCGGGu -3'
miRNA:   3'- -CGGUUCCaGGa-CCUc--GGGCUCA----GCCC- -5'
23603 3' -59.3 NC_005261.1 + 111783 0.66 0.751768
Target:  5'- cCCGGGGUgugccCCUGGAcGCCUGGcucgcGUCGGc -3'
miRNA:   3'- cGGUUCCA-----GGACCU-CGGGCU-----CAGCCc -5'
23603 3' -59.3 NC_005261.1 + 136513 0.67 0.739519
Target:  5'- cGCCugcuccggcgaacaGAGGUCCaggaUGGAGCCCucggccagcuGGUgGGGg -3'
miRNA:   3'- -CGG--------------UUCCAGG----ACCUCGGGc---------UCAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 68585 0.67 0.73286
Target:  5'- cGCCGAGGcgggCCgcgGGAGCggggCCGAcggcGUgGGGg -3'
miRNA:   3'- -CGGUUCCa---GGa--CCUCG----GGCU----CAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 33752 0.67 0.73286
Target:  5'- cGCCGGGG-CC-GG-GCCCGcucgCGGGg -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGGGCuca-GCCC- -5'
23603 3' -59.3 NC_005261.1 + 32271 0.67 0.73286
Target:  5'- cGCCGAGGcgCCgccgcUGGuGCUgGAGgCGGGc -3'
miRNA:   3'- -CGGUUCCa-GG-----ACCuCGGgCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 119885 0.67 0.723278
Target:  5'- aGCCGAGGgcguguacaCCUGGcGCCgCGAcgCGGGc -3'
miRNA:   3'- -CGGUUCCa--------GGACCuCGG-GCUcaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 37873 0.67 0.723278
Target:  5'- cGCCuGGcggcgcGUgCUGGAGCCCGAGcUGGc -3'
miRNA:   3'- -CGGuUC------CAgGACCUCGGGCUCaGCCc -5'
23603 3' -59.3 NC_005261.1 + 132618 0.67 0.723278
Target:  5'- cGCCAGGGggCgCUGGcG-CCGAGgacgCGGGc -3'
miRNA:   3'- -CGGUUCCa-G-GACCuCgGGCUCa---GCCC- -5'
23603 3' -59.3 NC_005261.1 + 98037 0.67 0.713622
Target:  5'- cGCCGcGGUaCUGGcGGCCgCGGGcggCGGGa -3'
miRNA:   3'- -CGGUuCCAgGACC-UCGG-GCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 34326 0.67 0.713622
Target:  5'- gGCCGAGGggCCccaaGGGGCCgGGGcggccgaCGGGg -3'
miRNA:   3'- -CGGUUCCa-GGa---CCUCGGgCUCa------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.