miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 136513 0.67 0.739519
Target:  5'- cGCCugcuccggcgaacaGAGGUCCaggaUGGAGCCCucggccagcuGGUgGGGg -3'
miRNA:   3'- -CGG--------------UUCCAGG----ACCUCGGGc---------UCAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 1181 0.68 0.644652
Target:  5'- cGCCGcGG-CC-GGGGCCgGGGcCGGGc -3'
miRNA:   3'- -CGGUuCCaGGaCCUCGGgCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 92617 0.68 0.644652
Target:  5'- uGCCGGGGcCCcGG-GCgCGAGagCGGGa -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGgGCUCa-GCCC- -5'
23603 3' -59.3 NC_005261.1 + 25146 0.68 0.674423
Target:  5'- uGCCAGcGUCCUcacuucccGGGGCggCCGAG-CGGGu -3'
miRNA:   3'- -CGGUUcCAGGA--------CCUCG--GGCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 1231 0.68 0.683307
Target:  5'- cGCCGucgccGGcCCcgGGaAGCCCGAGUccgugccCGGGg -3'
miRNA:   3'- -CGGUu----CCaGGa-CC-UCGGGCUCA-------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 48302 0.68 0.684292
Target:  5'- -gCGAGG-CCUcGGggggcgcgucgGGCCCGGGcUCGGGg -3'
miRNA:   3'- cgGUUCCaGGA-CC-----------UCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 92763 0.69 0.604858
Target:  5'- cGCCGcucGGaCCgggccGAGCCCGGGcUCGGGg -3'
miRNA:   3'- -CGGUu--CCaGGac---CUCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 98685 0.69 0.612807
Target:  5'- cGCCGGGG-CCggaggcgcggccGGAGCUgGGGcCGGGg -3'
miRNA:   3'- -CGGUUCCaGGa-----------CCUCGGgCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 33694 0.69 0.613801
Target:  5'- cCCGGGGUCgCgcGGGGCCCGcugcacgaggggcGGUgGGGg -3'
miRNA:   3'- cGGUUCCAG-Ga-CCUCGGGC-------------UCAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 22656 0.69 0.614795
Target:  5'- cGCUGGcGGcgCCUGGGcggcGCCCGAGUgccgcCGGGg -3'
miRNA:   3'- -CGGUU-CCa-GGACCU----CGGGCUCA-----GCCC- -5'
23603 3' -59.3 NC_005261.1 + 71612 0.69 0.614795
Target:  5'- cGCCGcGGcCCgGGcgcgGGCCCGGGcggCGGGa -3'
miRNA:   3'- -CGGUuCCaGGaCC----UCGGGCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 28959 0.69 0.624744
Target:  5'- aGCC-AGGcCCa--AGCCCGAGcCGGGg -3'
miRNA:   3'- -CGGuUCCaGGaccUCGGGCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 124952 0.69 0.62574
Target:  5'- uGCCGGcGcCCUGGAGCCCGcacucaaaucgcgCGGGg -3'
miRNA:   3'- -CGGUUcCaGGACCUCGGGCuca----------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 136645 0.7 0.526579
Target:  5'- gGCCu-GGUCCgccUGGAGCUCGAugaggaucUCGGGg -3'
miRNA:   3'- -CGGuuCCAGG---ACCUCGGGCUc-------AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 123789 0.7 0.545863
Target:  5'- aGCCAGGGccUCCUGGAagguGgCCGAGUCc-- -3'
miRNA:   3'- -CGGUUCC--AGGACCU----CgGGCUCAGccc -5'
23603 3' -59.3 NC_005261.1 + 28765 0.7 0.55559
Target:  5'- gGCCGGGGgcgCCUGG-GCCgCGGcgCGGGc -3'
miRNA:   3'- -CGGUUCCa--GGACCuCGG-GCUcaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 97668 0.7 0.55559
Target:  5'- gGCCGGcGUCCgcGGGGCuuGGG-CGGGg -3'
miRNA:   3'- -CGGUUcCAGGa-CCUCGggCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 2805 0.7 0.564388
Target:  5'- gGCCGggAGGggCCgGGcggccccAGCCCGAGcUCGGGc -3'
miRNA:   3'- -CGGU--UCCa-GGaCC-------UCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 23738 0.7 0.565367
Target:  5'- cGCCGAGGcgcgUCCgGGAGgggcgggcuugcCCCGGG-CGGGc -3'
miRNA:   3'- -CGGUUCC----AGGaCCUC------------GGGCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 30878 0.71 0.488831
Target:  5'- gGCCGccGGcCCUGccGCCCGAGcUCGGGc -3'
miRNA:   3'- -CGGUu-CCaGGACcuCGGGCUC-AGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.