Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 92763 | 0.69 | 0.604858 |
Target: 5'- cGCCGcucGGaCCgggccGAGCCCGGGcUCGGGg -3' miRNA: 3'- -CGGUu--CCaGGac---CUCGGGCUC-AGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 98685 | 0.69 | 0.612807 |
Target: 5'- cGCCGGGG-CCggaggcgcggccGGAGCUgGGGcCGGGg -3' miRNA: 3'- -CGGUUCCaGGa-----------CCUCGGgCUCaGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 22656 | 0.69 | 0.614795 |
Target: 5'- cGCUGGcGGcgCCUGGGcggcGCCCGAGUgccgcCGGGg -3' miRNA: 3'- -CGGUU-CCa-GGACCU----CGGGCUCA-----GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 71612 | 0.69 | 0.614795 |
Target: 5'- cGCCGcGGcCCgGGcgcgGGCCCGGGcggCGGGa -3' miRNA: 3'- -CGGUuCCaGGaCC----UCGGGCUCa--GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 28959 | 0.69 | 0.624744 |
Target: 5'- aGCC-AGGcCCa--AGCCCGAGcCGGGg -3' miRNA: 3'- -CGGuUCCaGGaccUCGGGCUCaGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 124952 | 0.69 | 0.62574 |
Target: 5'- uGCCGGcGcCCUGGAGCCCGcacucaaaucgcgCGGGg -3' miRNA: 3'- -CGGUUcCaGGACCUCGGGCuca----------GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 92617 | 0.68 | 0.644652 |
Target: 5'- uGCCGGGGcCCcGG-GCgCGAGagCGGGa -3' miRNA: 3'- -CGGUUCCaGGaCCuCGgGCUCa-GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 25146 | 0.68 | 0.674423 |
Target: 5'- uGCCAGcGUCCUcacuucccGGGGCggCCGAG-CGGGu -3' miRNA: 3'- -CGGUUcCAGGA--------CCUCG--GGCUCaGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 1231 | 0.68 | 0.683307 |
Target: 5'- cGCCGucgccGGcCCcgGGaAGCCCGAGUccgugccCGGGg -3' miRNA: 3'- -CGGUu----CCaGGa-CC-UCGGGCUCA-------GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 48302 | 0.68 | 0.684292 |
Target: 5'- -gCGAGG-CCUcGGggggcgcgucgGGCCCGGGcUCGGGg -3' miRNA: 3'- cgGUUCCaGGA-CC-----------UCGGGCUC-AGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 1181 | 0.68 | 0.644652 |
Target: 5'- cGCCGcGG-CC-GGGGCCgGGGcCGGGc -3' miRNA: 3'- -CGGUuCCaGGaCCUCGGgCUCaGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 68585 | 0.67 | 0.73286 |
Target: 5'- cGCCGAGGcgggCCgcgGGAGCggggCCGAcggcGUgGGGg -3' miRNA: 3'- -CGGUUCCa---GGa--CCUCG----GGCU----CAgCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 33752 | 0.67 | 0.73286 |
Target: 5'- cGCCGGGG-CC-GG-GCCCGcucgCGGGg -3' miRNA: 3'- -CGGUUCCaGGaCCuCGGGCuca-GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 136513 | 0.67 | 0.739519 |
Target: 5'- cGCCugcuccggcgaacaGAGGUCCaggaUGGAGCCCucggccagcuGGUgGGGg -3' miRNA: 3'- -CGG--------------UUCCAGG----ACCUCGGGc---------UCAgCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 32271 | 0.67 | 0.73286 |
Target: 5'- cGCCGAGGcgCCgccgcUGGuGCUgGAGgCGGGc -3' miRNA: 3'- -CGGUUCCa-GG-----ACCuCGGgCUCaGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 87593 | 0.67 | 0.694121 |
Target: 5'- gGCCGGuGGUCUUGGuGCCggcgaccaccgCGAcGUUGGGc -3' miRNA: 3'- -CGGUU-CCAGGACCuCGG-----------GCU-CAGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 37873 | 0.67 | 0.723278 |
Target: 5'- cGCCuGGcggcgcGUgCUGGAGCCCGAGcUGGc -3' miRNA: 3'- -CGGuUC------CAgGACCUCGGGCUCaGCCc -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 119885 | 0.67 | 0.723278 |
Target: 5'- aGCCGAGGgcguguacaCCUGGcGCCgCGAcgCGGGc -3' miRNA: 3'- -CGGUUCCa--------GGACCuCGG-GCUcaGCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 132618 | 0.67 | 0.723278 |
Target: 5'- cGCCAGGGggCgCUGGcG-CCGAGgacgCGGGc -3' miRNA: 3'- -CGGUUCCa-G-GACCuCgGGCUCa---GCCC- -5' |
|||||||
23603 | 3' | -59.3 | NC_005261.1 | + | 98037 | 0.67 | 0.713622 |
Target: 5'- cGCCGcGGUaCUGGcGGCCgCGGGcggCGGGa -3' miRNA: 3'- -CGGUuCCAgGACC-UCGG-GCUCa--GCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home