miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 37873 0.67 0.723278
Target:  5'- cGCCuGGcggcgcGUgCUGGAGCCCGAGcUGGc -3'
miRNA:   3'- -CGGuUC------CAgGACCUCGGGCUCaGCCc -5'
23603 3' -59.3 NC_005261.1 + 38457 0.66 0.78832
Target:  5'- uGCCGAGGccaacgcguUCCUGGAGCagcaCGGccgCGGcGg -3'
miRNA:   3'- -CGGUUCC---------AGGACCUCGg---GCUca-GCC-C- -5'
23603 3' -59.3 NC_005261.1 + 48302 0.68 0.684292
Target:  5'- -gCGAGG-CCUcGGggggcgcgucgGGCCCGGGcUCGGGg -3'
miRNA:   3'- cgGUUCCaGGA-CC-----------UCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 57856 0.74 0.330547
Target:  5'- cGgCAAGG-CCUcGGcGCUCGGGUCGGGa -3'
miRNA:   3'- -CgGUUCCaGGA-CCuCGGGCUCAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 68585 0.67 0.73286
Target:  5'- cGCCGAGGcgggCCgcgGGAGCggggCCGAcggcGUgGGGg -3'
miRNA:   3'- -CGGUUCCa---GGa--CCUCG----GGCU----CAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 71612 0.69 0.614795
Target:  5'- cGCCGcGGcCCgGGcgcgGGCCCGGGcggCGGGa -3'
miRNA:   3'- -CGGUuCCaGGaCC----UCGGGCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 87593 0.67 0.694121
Target:  5'- gGCCGGuGGUCUUGGuGCCggcgaccaccgCGAcGUUGGGc -3'
miRNA:   3'- -CGGUU-CCAGGACCuCGG-----------GCU-CAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 90263 1.11 0.00107
Target:  5'- cGCCAAGGUCCUGGAGCCCGAGUCGGGc -3'
miRNA:   3'- -CGGUUCCAGGACCUCGGGCUCAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 92617 0.68 0.644652
Target:  5'- uGCCGGGGcCCcGG-GCgCGAGagCGGGa -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGgGCUCa-GCCC- -5'
23603 3' -59.3 NC_005261.1 + 92763 0.69 0.604858
Target:  5'- cGCCGcucGGaCCgggccGAGCCCGGGcUCGGGg -3'
miRNA:   3'- -CGGUu--CCaGGac---CUCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 96846 0.76 0.276156
Target:  5'- gGCCGGGGUCgacggGGGGCUCGGGgggcgCGGGu -3'
miRNA:   3'- -CGGUUCCAGga---CCUCGGGCUCa----GCCC- -5'
23603 3' -59.3 NC_005261.1 + 97668 0.7 0.55559
Target:  5'- gGCCGGcGUCCgcGGGGCuuGGG-CGGGg -3'
miRNA:   3'- -CGGUUcCAGGa-CCUCGggCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 98037 0.67 0.713622
Target:  5'- cGCCGcGGUaCUGGcGGCCgCGGGcggCGGGa -3'
miRNA:   3'- -CGGUuCCAgGACC-UCGG-GCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 98685 0.69 0.612807
Target:  5'- cGCCGGGG-CCggaggcgcggccGGAGCUgGGGcCGGGg -3'
miRNA:   3'- -CGGUUCCaGGa-----------CCUCGGgCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 111783 0.66 0.751768
Target:  5'- cCCGGGGUgugccCCUGGAcGCCUGGcucgcGUCGGc -3'
miRNA:   3'- cGGUUCCA-----GGACCU-CGGGCU-----CAGCCc -5'
23603 3' -59.3 NC_005261.1 + 113084 0.66 0.794513
Target:  5'- uCCAGGGccugcacacgcuccUCCUGGAGCUCGGcaUGGa -3'
miRNA:   3'- cGGUUCC--------------AGGACCUCGGGCUcaGCCc -5'
23603 3' -59.3 NC_005261.1 + 117217 0.66 0.779361
Target:  5'- cGCCcgcugCCUGGGcgccgaguccGCCuCGGGUCGGGu -3'
miRNA:   3'- -CGGuuccaGGACCU----------CGG-GCUCAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 118966 0.72 0.450618
Target:  5'- gGCCAAGGUCCUGcacGCCgCGcugugcuucugcGUCGGGg -3'
miRNA:   3'- -CGGUUCCAGGACcu-CGG-GCu-----------CAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 119885 0.67 0.723278
Target:  5'- aGCCGAGGgcguguacaCCUGGcGCCgCGAcgCGGGc -3'
miRNA:   3'- -CGGUUCCa--------GGACCuCGG-GCUcaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 121106 0.66 0.78832
Target:  5'- gGCCGugcGGGUCCUcuaGGGCgCgGAGgcgCGGGc -3'
miRNA:   3'- -CGGU---UCCAGGAc--CUCG-GgCUCa--GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.