miRNA display CGI


Results 41 - 52 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 121191 0.72 0.417502
Target:  5'- gGCCGGGG-CC-GG-GCCCGGGgccgCGGGc -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGGGCUCa---GCCC- -5'
23603 3' -59.3 NC_005261.1 + 121736 0.77 0.213353
Target:  5'- aGCCGAGGUCCggcucugagUGGAGUCCGAGcccgagcgcggUGGGg -3'
miRNA:   3'- -CGGUUCCAGG---------ACCUCGGGCUCa----------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 123789 0.7 0.545863
Target:  5'- aGCCAGGGccUCCUGGAagguGgCCGAGUCc-- -3'
miRNA:   3'- -CGGUUCC--AGGACCU----CgGGCUCAGccc -5'
23603 3' -59.3 NC_005261.1 + 124952 0.69 0.62574
Target:  5'- uGCCGGcGcCCUGGAGCCCGcacucaaaucgcgCGGGg -3'
miRNA:   3'- -CGGUUcCaGGACCUCGGGCuca----------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 125784 0.72 0.443525
Target:  5'- gGCCAAGG-CCgcugcgaacGGGGCuuGGGcCGGGg -3'
miRNA:   3'- -CGGUUCCaGGa--------CCUCGggCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 127904 0.71 0.507556
Target:  5'- gGCCcGGG-CCUGG-GCuuGGGcUCGGGc -3'
miRNA:   3'- -CGGuUCCaGGACCuCGggCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 128325 0.66 0.78832
Target:  5'- aCCAGGG-CCUgcgGGGGCuCCGAGagCGGc -3'
miRNA:   3'- cGGUUCCaGGA---CCUCG-GGCUCa-GCCc -5'
23603 3' -59.3 NC_005261.1 + 128785 0.66 0.779361
Target:  5'- cGCCGuuGUCUgGGcGCCCGGGcccgcggCGGGg -3'
miRNA:   3'- -CGGUucCAGGaCCuCGGGCUCa------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 129697 0.66 0.779361
Target:  5'- gGCCGGGG-CC-GGGGCCgGAGgcaGGc -3'
miRNA:   3'- -CGGUUCCaGGaCCUCGGgCUCag-CCc -5'
23603 3' -59.3 NC_005261.1 + 132618 0.67 0.723278
Target:  5'- cGCCAGGGggCgCUGGcG-CCGAGgacgCGGGc -3'
miRNA:   3'- -CGGUUCCa-G-GACCuCgGGCUCa---GCCC- -5'
23603 3' -59.3 NC_005261.1 + 136513 0.67 0.739519
Target:  5'- cGCCugcuccggcgaacaGAGGUCCaggaUGGAGCCCucggccagcuGGUgGGGg -3'
miRNA:   3'- -CGG--------------UUCCAGG----ACCUCGGGc---------UCAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 136645 0.7 0.526579
Target:  5'- gGCCu-GGUCCgccUGGAGCUCGAugaggaucUCGGGg -3'
miRNA:   3'- -CGGuuCCAGG---ACCUCGGGCUc-------AGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.