miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 97668 0.7 0.55559
Target:  5'- gGCCGGcGUCCgcGGGGCuuGGG-CGGGg -3'
miRNA:   3'- -CGGUUcCAGGa-CCUCGggCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 96846 0.76 0.276156
Target:  5'- gGCCGGGGUCgacggGGGGCUCGGGgggcgCGGGu -3'
miRNA:   3'- -CGGUUCCAGga---CCUCGGGCUCa----GCCC- -5'
23603 3' -59.3 NC_005261.1 + 92763 0.69 0.604858
Target:  5'- cGCCGcucGGaCCgggccGAGCCCGGGcUCGGGg -3'
miRNA:   3'- -CGGUu--CCaGGac---CUCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 92617 0.68 0.644652
Target:  5'- uGCCGGGGcCCcGG-GCgCGAGagCGGGa -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGgGCUCa-GCCC- -5'
23603 3' -59.3 NC_005261.1 + 90263 1.11 0.00107
Target:  5'- cGCCAAGGUCCUGGAGCCCGAGUCGGGc -3'
miRNA:   3'- -CGGUUCCAGGACCUCGGGCUCAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 87593 0.67 0.694121
Target:  5'- gGCCGGuGGUCUUGGuGCCggcgaccaccgCGAcGUUGGGc -3'
miRNA:   3'- -CGGUU-CCAGGACCuCGG-----------GCU-CAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 71612 0.69 0.614795
Target:  5'- cGCCGcGGcCCgGGcgcgGGCCCGGGcggCGGGa -3'
miRNA:   3'- -CGGUuCCaGGaCC----UCGGGCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 68585 0.67 0.73286
Target:  5'- cGCCGAGGcgggCCgcgGGAGCggggCCGAcggcGUgGGGg -3'
miRNA:   3'- -CGGUUCCa---GGa--CCUCG----GGCU----CAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 57856 0.74 0.330547
Target:  5'- cGgCAAGG-CCUcGGcGCUCGGGUCGGGa -3'
miRNA:   3'- -CgGUUCCaGGA-CCuCGGGCUCAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 48302 0.68 0.684292
Target:  5'- -gCGAGG-CCUcGGggggcgcgucgGGCCCGGGcUCGGGg -3'
miRNA:   3'- cgGUUCCaGGA-CC-----------UCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 38457 0.66 0.78832
Target:  5'- uGCCGAGGccaacgcguUCCUGGAGCagcaCGGccgCGGcGg -3'
miRNA:   3'- -CGGUUCC---------AGGACCUCGg---GCUca-GCC-C- -5'
23603 3' -59.3 NC_005261.1 + 37873 0.67 0.723278
Target:  5'- cGCCuGGcggcgcGUgCUGGAGCCCGAGcUGGc -3'
miRNA:   3'- -CGGuUC------CAgGACCUCGGGCUCaGCCc -5'
23603 3' -59.3 NC_005261.1 + 34326 0.67 0.713622
Target:  5'- gGCCGAGGggCCccaaGGGGCCgGGGcggccgaCGGGg -3'
miRNA:   3'- -CGGUUCCa-GGa---CCUCGGgCUCa------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 33752 0.67 0.73286
Target:  5'- cGCCGGGG-CC-GG-GCCCGcucgCGGGg -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGGGCuca-GCCC- -5'
23603 3' -59.3 NC_005261.1 + 33694 0.69 0.613801
Target:  5'- cCCGGGGUCgCgcGGGGCCCGcugcacgaggggcGGUgGGGg -3'
miRNA:   3'- cGGUUCCAG-Ga-CCUCGGGC-------------UCAgCCC- -5'
23603 3' -59.3 NC_005261.1 + 32271 0.67 0.73286
Target:  5'- cGCCGAGGcgCCgccgcUGGuGCUgGAGgCGGGc -3'
miRNA:   3'- -CGGUUCCa-GG-----ACCuCGGgCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 31003 0.71 0.488831
Target:  5'- gGCCGGGG-CCaGGGGCCCGGcGcCGGc -3'
miRNA:   3'- -CGGUUCCaGGaCCUCGGGCU-CaGCCc -5'
23603 3' -59.3 NC_005261.1 + 30878 0.71 0.488831
Target:  5'- gGCCGccGGcCCUGccGCCCGAGcUCGGGc -3'
miRNA:   3'- -CGGUu-CCaGGACcuCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 30794 0.73 0.36836
Target:  5'- gGUgGAGGUgCUGGGGCCgGAGgagcUGGGg -3'
miRNA:   3'- -CGgUUCCAgGACCUCGGgCUCa---GCCC- -5'
23603 3' -59.3 NC_005261.1 + 28959 0.69 0.624744
Target:  5'- aGCC-AGGcCCa--AGCCCGAGcCGGGg -3'
miRNA:   3'- -CGGuUCCaGGaccUCGGGCUCaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.