miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 28765 0.7 0.55559
Target:  5'- gGCCGGGGgcgCCUGG-GCCgCGGcgCGGGc -3'
miRNA:   3'- -CGGUUCCa--GGACCuCGG-GCUcaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 28099 0.66 0.797146
Target:  5'- cGCCGcagcaaagGGGUUagaggggGGGGCCuCGAGgCGGGc -3'
miRNA:   3'- -CGGU--------UCCAGga-----CCUCGG-GCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 25146 0.68 0.674423
Target:  5'- uGCCAGcGUCCUcacuucccGGGGCggCCGAG-CGGGu -3'
miRNA:   3'- -CGGUUcCAGGA--------CCUCG--GGCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 23738 0.7 0.565367
Target:  5'- cGCCGAGGcgcgUCCgGGAGgggcgggcuugcCCCGGG-CGGGc -3'
miRNA:   3'- -CGGUUCC----AGGaCCUC------------GGGCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 22656 0.69 0.614795
Target:  5'- cGCUGGcGGcgCCUGGGcggcGCCCGAGUgccgcCGGGg -3'
miRNA:   3'- -CGGUU-CCa-GGACCU----CGGGCUCA-----GCCC- -5'
23603 3' -59.3 NC_005261.1 + 16256 0.66 0.785646
Target:  5'- cGCCGGGG-CCgccgGGGccgggcuucggcucGCCCGGgggggcgccGUCGGGc -3'
miRNA:   3'- -CGGUUCCaGGa---CCU--------------CGGGCU---------CAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 15929 0.75 0.309268
Target:  5'- gGCCGGGG-CC-GGGGCCCGGGcaggagcCGGGg -3'
miRNA:   3'- -CGGUUCCaGGaCCUCGGGCUCa------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 4998 0.66 0.751768
Target:  5'- cGCCGAGGcCCccGGGcccCCCGGGUucucCGGGu -3'
miRNA:   3'- -CGGUUCCaGGa-CCUc--GGGCUCA----GCCC- -5'
23603 3' -59.3 NC_005261.1 + 2984 0.72 0.452401
Target:  5'- gGCUggGGcucggCCUGGcGGCCCGGcGcCGGGg -3'
miRNA:   3'- -CGGuuCCa----GGACC-UCGGGCU-CaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 2805 0.7 0.564388
Target:  5'- gGCCGggAGGggCCgGGcggccccAGCCCGAGcUCGGGc -3'
miRNA:   3'- -CGGU--UCCa-GGaCC-------UCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 1231 0.68 0.683307
Target:  5'- cGCCGucgccGGcCCcgGGaAGCCCGAGUccgugccCGGGg -3'
miRNA:   3'- -CGGUu----CCaGGa-CC-UCGGGCUCA-------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 1181 0.68 0.644652
Target:  5'- cGCCGcGG-CC-GGGGCCgGGGcCGGGc -3'
miRNA:   3'- -CGGUuCCaGGaCCUCGGgCUCaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.