miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 3' -59.3 NC_005261.1 + 92617 0.68 0.644652
Target:  5'- uGCCGGGGcCCcGG-GCgCGAGagCGGGa -3'
miRNA:   3'- -CGGUUCCaGGaCCuCGgGCUCa-GCCC- -5'
23603 3' -59.3 NC_005261.1 + 25146 0.68 0.674423
Target:  5'- uGCCAGcGUCCUcacuucccGGGGCggCCGAG-CGGGu -3'
miRNA:   3'- -CGGUUcCAGGA--------CCUCG--GGCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 1231 0.68 0.683307
Target:  5'- cGCCGucgccGGcCCcgGGaAGCCCGAGUccgugccCGGGg -3'
miRNA:   3'- -CGGUu----CCaGGa-CC-UCGGGCUCA-------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 48302 0.68 0.684292
Target:  5'- -gCGAGG-CCUcGGggggcgcgucgGGCCCGGGcUCGGGg -3'
miRNA:   3'- cgGUUCCaGGA-CC-----------UCGGGCUC-AGCCC- -5'
23603 3' -59.3 NC_005261.1 + 87593 0.67 0.694121
Target:  5'- gGCCGGuGGUCUUGGuGCCggcgaccaccgCGAcGUUGGGc -3'
miRNA:   3'- -CGGUU-CCAGGACCuCGG-----------GCU-CAGCCC- -5'
23603 3' -59.3 NC_005261.1 + 34326 0.67 0.713622
Target:  5'- gGCCGAGGggCCccaaGGGGCCgGGGcggccgaCGGGg -3'
miRNA:   3'- -CGGUUCCa-GGa---CCUCGGgCUCa------GCCC- -5'
23603 3' -59.3 NC_005261.1 + 98037 0.67 0.713622
Target:  5'- cGCCGcGGUaCUGGcGGCCgCGGGcggCGGGa -3'
miRNA:   3'- -CGGUuCCAgGACC-UCGG-GCUCa--GCCC- -5'
23603 3' -59.3 NC_005261.1 + 119885 0.67 0.723278
Target:  5'- aGCCGAGGgcguguacaCCUGGcGCCgCGAcgCGGGc -3'
miRNA:   3'- -CGGUUCCa--------GGACCuCGG-GCUcaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 37873 0.67 0.723278
Target:  5'- cGCCuGGcggcgcGUgCUGGAGCCCGAGcUGGc -3'
miRNA:   3'- -CGGuUC------CAgGACCUCGGGCUCaGCCc -5'
23603 3' -59.3 NC_005261.1 + 132618 0.67 0.723278
Target:  5'- cGCCAGGGggCgCUGGcG-CCGAGgacgCGGGc -3'
miRNA:   3'- -CGGUUCCa-G-GACCuCgGGCUCa---GCCC- -5'
23603 3' -59.3 NC_005261.1 + 32271 0.67 0.73286
Target:  5'- cGCCGAGGcgCCgccgcUGGuGCUgGAGgCGGGc -3'
miRNA:   3'- -CGGUUCCa-GG-----ACCuCGGgCUCaGCCC- -5'
23603 3' -59.3 NC_005261.1 + 28099 0.66 0.797146
Target:  5'- cGCCGcagcaaagGGGUUagaggggGGGGCCuCGAGgCGGGc -3'
miRNA:   3'- -CGGU--------UCCAGga-----CCUCGG-GCUCaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.