miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23603 5' -55.2 NC_005261.1 + 131687 0.66 0.915506
Target:  5'- cGCCCUGcgCGcGGcGCUGGACc--GCCu -3'
miRNA:   3'- -UGGGGCa-GUaCCaCGACCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 69652 0.66 0.915506
Target:  5'- cGCCCuCGUCAaccGGcgGCUGGGggugGCCg -3'
miRNA:   3'- -UGGG-GCAGUa--CCa-CGACCUgaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 32277 0.66 0.909492
Target:  5'- gGCgCCGcCGcUGGUGCUGGagGCgggcGCCg -3'
miRNA:   3'- -UGgGGCaGU-ACCACGACC--UGaaa-CGG- -5'
23603 5' -55.2 NC_005261.1 + 42338 0.66 0.909492
Target:  5'- aACUgcaCGUCcUGGaUGCUGGGCgggcugGCCg -3'
miRNA:   3'- -UGGg--GCAGuACC-ACGACCUGaaa---CGG- -5'
23603 5' -55.2 NC_005261.1 + 35788 0.66 0.909492
Target:  5'- gGCCCgCGggcgcCAUGGcGCgGGACg--GCCu -3'
miRNA:   3'- -UGGG-GCa----GUACCaCGaCCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 111373 0.66 0.905767
Target:  5'- uGCCCCcgaagaGUCAgagagGGUGCUagcuagcuagcggacGGGCgg-GCCa -3'
miRNA:   3'- -UGGGG------CAGUa----CCACGA---------------CCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 104700 0.67 0.880183
Target:  5'- cGCCCCGaagagcgGCUGGACg--GCCg -3'
miRNA:   3'- -UGGGGCaguaccaCGACCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 33301 0.67 0.875837
Target:  5'- cACCCCGUCGcGGgacCaGGACcgcUGCCg -3'
miRNA:   3'- -UGGGGCAGUaCCac-GaCCUGaa-ACGG- -5'
23603 5' -55.2 NC_005261.1 + 14259 0.67 0.875837
Target:  5'- uGCCCCGgugUCGgcuucgGG-GCUGGgGCUgggGCCa -3'
miRNA:   3'- -UGGGGC---AGUa-----CCaCGACC-UGAaa-CGG- -5'
23603 5' -55.2 NC_005261.1 + 38788 0.67 0.85609
Target:  5'- cACCCUGuUCAUGGUcuccuccaucgacgaGCUcGGGCggcGCCa -3'
miRNA:   3'- -UGGGGC-AGUACCA---------------CGA-CCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 74119 0.67 0.852924
Target:  5'- gACCCgGUgGUccuggcgccGGUGCUGGugUUcGUCu -3'
miRNA:   3'- -UGGGgCAgUA---------CCACGACCugAAaCGG- -5'
23603 5' -55.2 NC_005261.1 + 33841 0.68 0.828162
Target:  5'- gGCCCCc---UGGcGCUGGGCgg-GCCg -3'
miRNA:   3'- -UGGGGcaguACCaCGACCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 4735 0.68 0.810724
Target:  5'- gGCCCCagaGUCAUcGGUccccgGCUcGGGCUUggGCCu -3'
miRNA:   3'- -UGGGG---CAGUA-CCA-----CGA-CCUGAAa-CGG- -5'
23603 5' -55.2 NC_005261.1 + 125268 0.69 0.783339
Target:  5'- uCCUCGUCcgGGggccGCUGGAagucagGCCg -3'
miRNA:   3'- uGGGGCAGuaCCa---CGACCUgaaa--CGG- -5'
23603 5' -55.2 NC_005261.1 + 92103 0.7 0.735031
Target:  5'- cCCCCGUCccgcagcacGUGGUaggcgaagaauaGCUcGGGCUggGCCa -3'
miRNA:   3'- uGGGGCAG---------UACCA------------CGA-CCUGAaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 31916 0.71 0.694672
Target:  5'- uACCCCGg---GGcgccgccGCUGGGCUcUGCCg -3'
miRNA:   3'- -UGGGGCaguaCCa------CGACCUGAaACGG- -5'
23603 5' -55.2 NC_005261.1 + 110885 0.71 0.684424
Target:  5'- uGCCCCGUCucgcgGCUGGGCgacUGCg -3'
miRNA:   3'- -UGGGGCAGuaccaCGACCUGaa-ACGg -5'
23603 5' -55.2 NC_005261.1 + 76903 0.72 0.591251
Target:  5'- cGCCCaCGUCgcgcuGUGcGUGCUGGGCc--GCCg -3'
miRNA:   3'- -UGGG-GCAG-----UAC-CACGACCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 83854 0.73 0.570681
Target:  5'- gGCCCCG-C-UGG-GCUGGGCcggGCCg -3'
miRNA:   3'- -UGGGGCaGuACCaCGACCUGaaaCGG- -5'
23603 5' -55.2 NC_005261.1 + 23881 0.73 0.570681
Target:  5'- uGCCCCGggCgggccggcuaggGUGGgcucGCUGGGCUggGCCa -3'
miRNA:   3'- -UGGGGCa-G------------UACCa---CGACCUGAaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.