Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 19339 | 0.66 | 0.977796 |
Target: 5'- cGCAcGUGCcAGCagcUCGGGGgaguucgucUCCAGGg -3' miRNA: 3'- -CGU-CACGcUCGaauAGCUCC---------AGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 70737 | 0.66 | 0.977796 |
Target: 5'- aGCAcGUGCGc-CUccUCGAgcaGGUCCAGGc -3' miRNA: 3'- -CGU-CACGCucGAauAGCU---CCAGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 42854 | 0.66 | 0.975294 |
Target: 5'- -gAGUGCGAGCgcGUCGu-GUCCGa- -3' miRNA: 3'- cgUCACGCUCGaaUAGCucCAGGUcc -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 83618 | 0.66 | 0.972592 |
Target: 5'- cGCGGcGUGguccAGCg---CGAGGUCCAGc -3' miRNA: 3'- -CGUCaCGC----UCGaauaGCUCCAGGUCc -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 4157 | 0.66 | 0.972592 |
Target: 5'- aGCAG-GCGcgccAGCUg--C-AGGUCCGGGc -3' miRNA: 3'- -CGUCaCGC----UCGAauaGcUCCAGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 36282 | 0.66 | 0.969683 |
Target: 5'- -aAGUGCGGGCgcggCcGGGaCCGGGa -3' miRNA: 3'- cgUCACGCUCGaauaGcUCCaGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 58864 | 0.66 | 0.96656 |
Target: 5'- cGUAGUG-GaAGCgcUGggGAGGUCCGGGc -3' miRNA: 3'- -CGUCACgC-UCGa-AUagCUCCAGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 58368 | 0.66 | 0.96656 |
Target: 5'- aGguGUGCG-GCgacGUCGGccUCCAGGg -3' miRNA: 3'- -CguCACGCuCGaa-UAGCUccAGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 29350 | 0.66 | 0.96656 |
Target: 5'- gGCGGcGCGGGCgacacUcgCGAGGgccUCUGGGa -3' miRNA: 3'- -CGUCaCGCUCGa----AuaGCUCC---AGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 13701 | 0.66 | 0.96656 |
Target: 5'- gGCGGgGCGGGCUgggggCGGGGgUgGGGg -3' miRNA: 3'- -CGUCaCGCUCGAaua--GCUCCaGgUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 99351 | 0.67 | 0.963217 |
Target: 5'- aGCAGcaGCGcGCacgUGaCGAGGUCCAGc -3' miRNA: 3'- -CGUCa-CGCuCGa--AUaGCUCCAGGUCc -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 43390 | 0.67 | 0.963217 |
Target: 5'- cGCGGUGCcGGCaccGUCcAGGcgCCGGGg -3' miRNA: 3'- -CGUCACGcUCGaa-UAGcUCCa-GGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 69745 | 0.67 | 0.959647 |
Target: 5'- gGCGGaggaggagGCGAGCg---CGGGGggcggcgCCGGGg -3' miRNA: 3'- -CGUCa-------CGCUCGaauaGCUCCa------GGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 90233 | 0.67 | 0.959647 |
Target: 5'- gGCGG-GCGGGCgcgccGUCG-GGUaUCAGGg -3' miRNA: 3'- -CGUCaCGCUCGaa---UAGCuCCA-GGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 22036 | 0.67 | 0.959647 |
Target: 5'- gGCGGgGUucagGGGCUccggCGGGGUUCAGGg -3' miRNA: 3'- -CGUCaCG----CUCGAaua-GCUCCAGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 92781 | 0.67 | 0.955845 |
Target: 5'- -gAGccCGGGCUcgggGUCGGGGUCCGGu -3' miRNA: 3'- cgUCacGCUCGAa---UAGCUCCAGGUCc -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 100494 | 0.67 | 0.955845 |
Target: 5'- aGCAGaGCG-GCgugccGUCGGcGUCCAGGu -3' miRNA: 3'- -CGUCaCGCuCGaa---UAGCUcCAGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 96817 | 0.67 | 0.951808 |
Target: 5'- cCAGUccgaaGAGCUgucggcggUGUCGAGG-CCGGGg -3' miRNA: 3'- cGUCAcg---CUCGA--------AUAGCUCCaGGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 73275 | 0.68 | 0.935261 |
Target: 5'- gGCAGUaGCGGGCgaa--GGGGUagcacaggcaggcggCCAGGg -3' miRNA: 3'- -CGUCA-CGCUCGaauagCUCCA---------------GGUCC- -5' |
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23604 | 3' | -52.8 | NC_005261.1 | + | 46031 | 0.68 | 0.927959 |
Target: 5'- aGCAGgacGgGGGCgcgGUagaGGGUCCAGGg -3' miRNA: 3'- -CGUCa--CgCUCGaa-UAgc-UCCAGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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