Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 99351 | 0.67 | 0.963217 |
Target: 5'- aGCAGcaGCGcGCacgUGaCGAGGUCCAGc -3' miRNA: 3'- -CGUCa-CGCuCGa--AUaGCUCCAGGUCc -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 43390 | 0.67 | 0.963217 |
Target: 5'- cGCGGUGCcGGCaccGUCcAGGcgCCGGGg -3' miRNA: 3'- -CGUCACGcUCGaa-UAGcUCCa-GGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 58864 | 0.66 | 0.96656 |
Target: 5'- cGUAGUG-GaAGCgcUGggGAGGUCCGGGc -3' miRNA: 3'- -CGUCACgC-UCGa-AUagCUCCAGGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 58368 | 0.66 | 0.96656 |
Target: 5'- aGguGUGCG-GCgacGUCGGccUCCAGGg -3' miRNA: 3'- -CguCACGCuCGaa-UAGCUccAGGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 29350 | 0.66 | 0.96656 |
Target: 5'- gGCGGcGCGGGCgacacUcgCGAGGgccUCUGGGa -3' miRNA: 3'- -CGUCaCGCUCGa----AuaGCUCC---AGGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 13701 | 0.66 | 0.96656 |
Target: 5'- gGCGGgGCGGGCUgggggCGGGGgUgGGGg -3' miRNA: 3'- -CGUCaCGCUCGAaua--GCUCCaGgUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 36282 | 0.66 | 0.969683 |
Target: 5'- -aAGUGCGGGCgcggCcGGGaCCGGGa -3' miRNA: 3'- cgUCACGCUCGaauaGcUCCaGGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 4157 | 0.66 | 0.972592 |
Target: 5'- aGCAG-GCGcgccAGCUg--C-AGGUCCGGGc -3' miRNA: 3'- -CGUCaCGC----UCGAauaGcUCCAGGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 83618 | 0.66 | 0.972592 |
Target: 5'- cGCGGcGUGguccAGCg---CGAGGUCCAGc -3' miRNA: 3'- -CGUCaCGC----UCGaauaGCUCCAGGUCc -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 42854 | 0.66 | 0.975294 |
Target: 5'- -gAGUGCGAGCgcGUCGu-GUCCGa- -3' miRNA: 3'- cgUCACGCUCGaaUAGCucCAGGUcc -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 70737 | 0.66 | 0.977796 |
Target: 5'- aGCAcGUGCGc-CUccUCGAgcaGGUCCAGGc -3' miRNA: 3'- -CGU-CACGCucGAauAGCU---CCAGGUCC- -5' |
|||||||
23604 | 3' | -52.8 | NC_005261.1 | + | 19339 | 0.66 | 0.977796 |
Target: 5'- cGCAcGUGCcAGCagcUCGGGGgaguucgucUCCAGGg -3' miRNA: 3'- -CGU-CACGcUCGaauAGCUCC---------AGGUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home