miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 3' -52.8 NC_005261.1 + 136497 0.68 0.926331
Target:  5'- aGCAGcucgGCGccgacgccugcuccGGCgaacaGAGGUCCAGGa -3'
miRNA:   3'- -CGUCa---CGC--------------UCGaauagCUCCAGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 64518 0.68 0.916678
Target:  5'- cGCGG-GCG-GCUccucGUCGgggggcAGGUCCGGGa -3'
miRNA:   3'- -CGUCaCGCuCGAa---UAGC------UCCAGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 132176 0.68 0.916678
Target:  5'- gGCAGcGCGGGCgggggcccgcAUUGcuuGGGUCCGGGc -3'
miRNA:   3'- -CGUCaCGCUCGaa--------UAGC---UCCAGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 24373 0.68 0.916088
Target:  5'- gGCGGUGCucccgguGGGCUcGUCGGcggcggggcGGUCCuGGg -3'
miRNA:   3'- -CGUCACG-------CUCGAaUAGCU---------CCAGGuCC- -5'
23604 3' -52.8 NC_005261.1 + 108904 0.69 0.910664
Target:  5'- cGCcg-GCGAGCggGgcgCGGGGUCgGGGc -3'
miRNA:   3'- -CGucaCGCUCGaaUa--GCUCCAGgUCC- -5'
23604 3' -52.8 NC_005261.1 + 40460 0.69 0.884165
Target:  5'- aGCAcacgGCGAcCUUGUCGAGGcUCAGGc -3'
miRNA:   3'- -CGUca--CGCUcGAAUAGCUCCaGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 81350 0.7 0.876947
Target:  5'- gGCGGgGCGggGGCUUG-CGGGGggcgCCGGGc -3'
miRNA:   3'- -CGUCaCGC--UCGAAUaGCUCCa---GGUCC- -5'
23604 3' -52.8 NC_005261.1 + 40984 0.7 0.876947
Target:  5'- uGCAGUa-GAGCaaGUCGAGGguccccucgUCCAGGg -3'
miRNA:   3'- -CGUCAcgCUCGaaUAGCUCC---------AGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 33609 0.7 0.853944
Target:  5'- cCGGcGCGGGCgg--CGGGGcCCGGGg -3'
miRNA:   3'- cGUCaCGCUCGaauaGCUCCaGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 33801 0.76 0.538915
Target:  5'- cGCGGgcgGCGGGCUUGUCuuuGGgcggCCGGGg -3'
miRNA:   3'- -CGUCa--CGCUCGAAUAGcu-CCa---GGUCC- -5'
23604 3' -52.8 NC_005261.1 + 104998 0.77 0.508773
Target:  5'- cCAGcGCGGGCggcgGUCGGGGcgCCAGGg -3'
miRNA:   3'- cGUCaCGCUCGaa--UAGCUCCa-GGUCC- -5'
23604 3' -52.8 NC_005261.1 + 87709 1.13 0.003191
Target:  5'- aGCAGUGCGAGCUUAUCGAGGUCCAGGu -3'
miRNA:   3'- -CGUCACGCUCGAAUAGCUCCAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.