miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 3' -52.8 NC_005261.1 + 81350 0.7 0.876947
Target:  5'- gGCGGgGCGggGGCUUG-CGGGGggcgCCGGGc -3'
miRNA:   3'- -CGUCaCGC--UCGAAUaGCUCCa---GGUCC- -5'
23604 3' -52.8 NC_005261.1 + 83618 0.66 0.972592
Target:  5'- cGCGGcGUGguccAGCg---CGAGGUCCAGc -3'
miRNA:   3'- -CGUCaCGC----UCGaauaGCUCCAGGUCc -5'
23604 3' -52.8 NC_005261.1 + 87709 1.13 0.003191
Target:  5'- aGCAGUGCGAGCUUAUCGAGGUCCAGGu -3'
miRNA:   3'- -CGUCACGCUCGAAUAGCUCCAGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 90233 0.67 0.959647
Target:  5'- gGCGG-GCGGGCgcgccGUCG-GGUaUCAGGg -3'
miRNA:   3'- -CGUCaCGCUCGaa---UAGCuCCA-GGUCC- -5'
23604 3' -52.8 NC_005261.1 + 92781 0.67 0.955845
Target:  5'- -gAGccCGGGCUcgggGUCGGGGUCCGGu -3'
miRNA:   3'- cgUCacGCUCGAa---UAGCUCCAGGUCc -5'
23604 3' -52.8 NC_005261.1 + 96817 0.67 0.951808
Target:  5'- cCAGUccgaaGAGCUgucggcggUGUCGAGG-CCGGGg -3'
miRNA:   3'- cGUCAcg---CUCGA--------AUAGCUCCaGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 99351 0.67 0.963217
Target:  5'- aGCAGcaGCGcGCacgUGaCGAGGUCCAGc -3'
miRNA:   3'- -CGUCa-CGCuCGa--AUaGCUCCAGGUCc -5'
23604 3' -52.8 NC_005261.1 + 100494 0.67 0.955845
Target:  5'- aGCAGaGCG-GCgugccGUCGGcGUCCAGGu -3'
miRNA:   3'- -CGUCaCGCuCGaa---UAGCUcCAGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 104998 0.77 0.508773
Target:  5'- cCAGcGCGGGCggcgGUCGGGGcgCCAGGg -3'
miRNA:   3'- cGUCaCGCUCGaa--UAGCUCCa-GGUCC- -5'
23604 3' -52.8 NC_005261.1 + 108904 0.69 0.910664
Target:  5'- cGCcg-GCGAGCggGgcgCGGGGUCgGGGc -3'
miRNA:   3'- -CGucaCGCUCGaaUa--GCUCCAGgUCC- -5'
23604 3' -52.8 NC_005261.1 + 132176 0.68 0.916678
Target:  5'- gGCAGcGCGGGCgggggcccgcAUUGcuuGGGUCCGGGc -3'
miRNA:   3'- -CGUCaCGCUCGaa--------UAGC---UCCAGGUCC- -5'
23604 3' -52.8 NC_005261.1 + 136497 0.68 0.926331
Target:  5'- aGCAGcucgGCGccgacgccugcuccGGCgaacaGAGGUCCAGGa -3'
miRNA:   3'- -CGUCa---CGC--------------UCGaauagCUCCAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.