miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 127094 0.66 0.922603
Target:  5'- -cCGCAauGACGgcuggGCGCGguGaCCCGCGa -3'
miRNA:   3'- caGCGU--CUGCa----UGUGCuuC-GGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 18868 0.66 0.922603
Target:  5'- -aUGCAgGGCuUGCA-GGAGCCCGCGc -3'
miRNA:   3'- caGCGU-CUGcAUGUgCUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 20448 0.66 0.922603
Target:  5'- -gCGCAGACGUgcccGCGCGGguguGGCgCUuccuuGCGGa -3'
miRNA:   3'- caGCGUCUGCA----UGUGCU----UCG-GG-----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 30139 0.66 0.922603
Target:  5'- -aCGCGGugGaGCGCGcgcGCCUuaGCGGc -3'
miRNA:   3'- caGCGUCugCaUGUGCuu-CGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 54907 0.66 0.922603
Target:  5'- -cCGCAGcgcGCGUA-GCGAGcacucGCCCGCGa -3'
miRNA:   3'- caGCGUC---UGCAUgUGCUU-----CGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 67242 0.66 0.922603
Target:  5'- cGUCGCAGACGagguccgccgugUACGCcgccAGCCCGg-- -3'
miRNA:   3'- -CAGCGUCUGC------------AUGUGcu--UCGGGCgcc -5'
23604 5' -55.9 NC_005261.1 + 68062 0.66 0.922603
Target:  5'- -aCGCGGGCacgGUGgucuCGGucGCCCGCGGg -3'
miRNA:   3'- caGCGUCUG---CAUgu--GCUu-CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 115825 0.66 0.922603
Target:  5'- -aCGCGGuGCGccagcuuggGCGCGuuGGCCCGCGcGg -3'
miRNA:   3'- caGCGUC-UGCa--------UGUGCu-UCGGGCGC-C- -5'
23604 5' -55.9 NC_005261.1 + 116481 0.66 0.922603
Target:  5'- -gCGCGGGCGgg-GCG-GGCgCGCGGu -3'
miRNA:   3'- caGCGUCUGCaugUGCuUCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 127636 0.66 0.922603
Target:  5'- -aCGCGacGGCGgcgGCGCcggGggGCgCGCGGg -3'
miRNA:   3'- caGCGU--CUGCa--UGUG---CuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 129565 0.66 0.922603
Target:  5'- --gGCGGGCGUAgAgGAGgaggcggccgcGCgCCGCGGg -3'
miRNA:   3'- cagCGUCUGCAUgUgCUU-----------CG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132633 0.66 0.922603
Target:  5'- -gCGCcgaGGACGcggGCGCGGcGGCCCuaGCGGc -3'
miRNA:   3'- caGCG---UCUGCa--UGUGCU-UCGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 34528 0.66 0.922603
Target:  5'- uUCGCcguGACGgccCGCG-AGCUCGCGa -3'
miRNA:   3'- cAGCGu--CUGCau-GUGCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 4157 0.66 0.922053
Target:  5'- --aGCAGGCGcgccagcUGCAgGuccgGGCCCGCGa -3'
miRNA:   3'- cagCGUCUGC-------AUGUgCu---UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 35032 0.66 0.922053
Target:  5'- gGUCGCuGGCGcGCcgcccuaACGGcGGCCgCGCGGc -3'
miRNA:   3'- -CAGCGuCUGCaUG-------UGCU-UCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 39936 0.66 0.922053
Target:  5'- cGUCGaaggGGACcgcgaACACGGAGCCCucgcgcaggcucaGCGGg -3'
miRNA:   3'- -CAGCg---UCUGca---UGUGCUUCGGG-------------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 97081 0.66 0.919268
Target:  5'- cGUCGgAGGCGccgGCugGGccgggggcgccagccGGgCCGCGGc -3'
miRNA:   3'- -CAGCgUCUGCa--UGugCU---------------UCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 105978 0.66 0.916997
Target:  5'- -gCGCGG-CGUcgACGccGCCCGCGa -3'
miRNA:   3'- caGCGUCuGCAugUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 102951 0.66 0.916997
Target:  5'- -cUGCGGcgGCGgcCGCG-GGCgCCGCGGg -3'
miRNA:   3'- caGCGUC--UGCauGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 47584 0.66 0.916997
Target:  5'- -gCGCAGagccgcGCGcGCGCGAGGgagccgcccCCUGCGGg -3'
miRNA:   3'- caGCGUC------UGCaUGUGCUUC---------GGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.