Results 1 - 20 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23604 | 5' | -55.9 | NC_005261.1 | + | 47584 | 0.66 | 0.916997 |
Target: 5'- -gCGCAGagccgcGCGcGCGCGAGGgagccgcccCCUGCGGg -3' miRNA: 3'- caGCGUC------UGCaUGUGCUUC---------GGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 18868 | 0.66 | 0.922603 |
Target: 5'- -aUGCAgGGCuUGCA-GGAGCCCGCGc -3' miRNA: 3'- caGCGU-CUGcAUGUgCUUCGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 39936 | 0.66 | 0.922053 |
Target: 5'- cGUCGaaggGGACcgcgaACACGGAGCCCucgcgcaggcucaGCGGg -3' miRNA: 3'- -CAGCg---UCUGca---UGUGCUUCGGG-------------CGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 35032 | 0.66 | 0.922053 |
Target: 5'- gGUCGCuGGCGcGCcgcccuaACGGcGGCCgCGCGGc -3' miRNA: 3'- -CAGCGuCUGCaUG-------UGCU-UCGG-GCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 4157 | 0.66 | 0.922053 |
Target: 5'- --aGCAGGCGcgccagcUGCAgGuccgGGCCCGCGa -3' miRNA: 3'- cagCGUCUGC-------AUGUgCu---UCGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 97081 | 0.66 | 0.919268 |
Target: 5'- cGUCGgAGGCGccgGCugGGccgggggcgccagccGGgCCGCGGc -3' miRNA: 3'- -CAGCgUCUGCa--UGugCU---------------UCgGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 118927 | 0.66 | 0.916997 |
Target: 5'- -cCGCGGGCGcggcgccGCGCGGcuGgCCGCGGc -3' miRNA: 3'- caGCGUCUGCa------UGUGCUu-CgGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 105978 | 0.66 | 0.916997 |
Target: 5'- -gCGCGG-CGUcgACGccGCCCGCGa -3' miRNA: 3'- caGCGUCuGCAugUGCuuCGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 102951 | 0.66 | 0.916997 |
Target: 5'- -cUGCGGcgGCGgcCGCG-GGCgCCGCGGg -3' miRNA: 3'- caGCGUC--UGCauGUGCuUCG-GGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 20448 | 0.66 | 0.922603 |
Target: 5'- -gCGCAGACGUgcccGCGCGGguguGGCgCUuccuuGCGGa -3' miRNA: 3'- caGCGUCUGCA----UGUGCU----UCG-GG-----CGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 30139 | 0.66 | 0.922603 |
Target: 5'- -aCGCGGugGaGCGCGcgcGCCUuaGCGGc -3' miRNA: 3'- caGCGUCugCaUGUGCuu-CGGG--CGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 54907 | 0.66 | 0.922603 |
Target: 5'- -cCGCAGcgcGCGUA-GCGAGcacucGCCCGCGa -3' miRNA: 3'- caGCGUC---UGCAUgUGCUU-----CGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 34528 | 0.66 | 0.922603 |
Target: 5'- uUCGCcguGACGgccCGCG-AGCUCGCGa -3' miRNA: 3'- cAGCGu--CUGCau-GUGCuUCGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 132633 | 0.66 | 0.922603 |
Target: 5'- -gCGCcgaGGACGcggGCGCGGcGGCCCuaGCGGc -3' miRNA: 3'- caGCG---UCUGCa--UGUGCU-UCGGG--CGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 129565 | 0.66 | 0.922603 |
Target: 5'- --gGCGGGCGUAgAgGAGgaggcggccgcGCgCCGCGGg -3' miRNA: 3'- cagCGUCUGCAUgUgCUU-----------CG-GGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 127636 | 0.66 | 0.922603 |
Target: 5'- -aCGCGacGGCGgcgGCGCcggGggGCgCGCGGg -3' miRNA: 3'- caGCGU--CUGCa--UGUG---CuuCGgGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 116481 | 0.66 | 0.922603 |
Target: 5'- -gCGCGGGCGgg-GCG-GGCgCGCGGu -3' miRNA: 3'- caGCGUCUGCaugUGCuUCGgGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 115825 | 0.66 | 0.922603 |
Target: 5'- -aCGCGGuGCGccagcuuggGCGCGuuGGCCCGCGcGg -3' miRNA: 3'- caGCGUC-UGCa--------UGUGCu-UCGGGCGC-C- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 68062 | 0.66 | 0.922603 |
Target: 5'- -aCGCGGGCacgGUGgucuCGGucGCCCGCGGg -3' miRNA: 3'- caGCGUCUG---CAUgu--GCUu-CGGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 67242 | 0.66 | 0.922603 |
Target: 5'- cGUCGCAGACGagguccgccgugUACGCcgccAGCCCGg-- -3' miRNA: 3'- -CAGCGUCUGC------------AUGUGcu--UCGGGCgcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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