Results 61 - 80 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23604 | 5' | -55.9 | NC_005261.1 | + | 102951 | 0.66 | 0.916997 |
Target: 5'- -cUGCGGcgGCGgcCGCG-GGCgCCGCGGg -3' miRNA: 3'- caGCGUC--UGCauGUGCuUCG-GGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 47584 | 0.66 | 0.916997 |
Target: 5'- -gCGCAGagccgcGCGcGCGCGAGGgagccgcccCCUGCGGg -3' miRNA: 3'- caGCGUC------UGCaUGUGCUUC---------GGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 121836 | 0.66 | 0.911156 |
Target: 5'- -cCGCGGcgGCGcaccgGCGCcagcAGCCCGCGGc -3' miRNA: 3'- caGCGUC--UGCa----UGUGcu--UCGGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 64751 | 0.66 | 0.911156 |
Target: 5'- cGUUGCGGAaGUugGCcucGGccAGCUCGCGGc -3' miRNA: 3'- -CAGCGUCUgCAugUG---CU--UCGGGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 57450 | 0.66 | 0.911156 |
Target: 5'- -gCGCGacGGCGUcCGCGAAGagcaCGCGGa -3' miRNA: 3'- caGCGU--CUGCAuGUGCUUCgg--GCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 37300 | 0.66 | 0.911156 |
Target: 5'- cUCGCGGAuCGccccccGCACGAGGa-CGCGGu -3' miRNA: 3'- cAGCGUCU-GCa-----UGUGCUUCggGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 136815 | 0.66 | 0.911156 |
Target: 5'- cUCGUAGcCGUAgACGgcGCCCccGCGc -3' miRNA: 3'- cAGCGUCuGCAUgUGCuuCGGG--CGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 130215 | 0.66 | 0.911156 |
Target: 5'- -cUGCAGGCGgaagaGCGucGGCCCGCu- -3' miRNA: 3'- caGCGUCUGCaug--UGCu-UCGGGCGcc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 74949 | 0.66 | 0.911156 |
Target: 5'- -gCGCGGGCGcGCucggcgcgcuCGAGGCCgCGCGc -3' miRNA: 3'- caGCGUCUGCaUGu---------GCUUCGG-GCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 48115 | 0.66 | 0.911156 |
Target: 5'- -aCG-AGACGgGCAUGgcGCgCGCGGg -3' miRNA: 3'- caGCgUCUGCaUGUGCuuCGgGCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 29034 | 0.66 | 0.911156 |
Target: 5'- gGUUGgGGAUG-ACACGggGgCCGCc- -3' miRNA: 3'- -CAGCgUCUGCaUGUGCuuCgGGCGcc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 19329 | 0.66 | 0.916997 |
Target: 5'- aGUCGUAG-CGcGCACGugccagcAGCUCGgGGg -3' miRNA: 3'- -CAGCGUCuGCaUGUGCu------UCGGGCgCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 28294 | 0.66 | 0.916997 |
Target: 5'- -cCGCGGuCGUcuccuucguuCGCGgcGCCCGCGc -3' miRNA: 3'- caGCGUCuGCAu---------GUGCuuCGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 1567 | 0.66 | 0.916997 |
Target: 5'- -cCGCAG-CG-GCGCGccGAGCCCccaGCGGu -3' miRNA: 3'- caGCGUCuGCaUGUGC--UUCGGG---CGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 132845 | 0.66 | 0.916997 |
Target: 5'- -aCGCGGcCGUcuacacGCACGGgcacAGCCUGCGc -3' miRNA: 3'- caGCGUCuGCA------UGUGCU----UCGGGCGCc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 132001 | 0.66 | 0.916997 |
Target: 5'- aGUCGCGGACGgcgACAacuGGgCCGCc- -3' miRNA: 3'- -CAGCGUCUGCa--UGUgcuUCgGGCGcc -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 121166 | 0.66 | 0.916997 |
Target: 5'- gGUUGCccGGGCGcucggUGCACGGggccggggccgGGCCCGgGGc -3' miRNA: 3'- -CAGCG--UCUGC-----AUGUGCU-----------UCGGGCgCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 97624 | 0.66 | 0.916997 |
Target: 5'- --aGCGGGCGgagcGgGCGGAGCgggCGCGGg -3' miRNA: 3'- cagCGUCUGCa---UgUGCUUCGg--GCGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 61781 | 0.66 | 0.916997 |
Target: 5'- aGUCgaGCAGAguUGUGCGCGuGAGCUCcauGCGGc -3' miRNA: 3'- -CAG--CGUCU--GCAUGUGC-UUCGGG---CGCC- -5' |
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23604 | 5' | -55.9 | NC_005261.1 | + | 23478 | 0.66 | 0.916997 |
Target: 5'- --nGCGGcgaGUGCGCG-GGCCCGCcuGGg -3' miRNA: 3'- cagCGUCug-CAUGUGCuUCGGGCG--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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