miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 97624 0.66 0.916997
Target:  5'- --aGCGGGCGgagcGgGCGGAGCgggCGCGGg -3'
miRNA:   3'- cagCGUCUGCa---UgUGCUUCGg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 61781 0.66 0.916997
Target:  5'- aGUCgaGCAGAguUGUGCGCGuGAGCUCcauGCGGc -3'
miRNA:   3'- -CAG--CGUCU--GCAUGUGC-UUCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 23478 0.66 0.916997
Target:  5'- --nGCGGcgaGUGCGCG-GGCCCGCcuGGg -3'
miRNA:   3'- cagCGUCug-CAUGUGCuUCGGGCG--CC- -5'
23604 5' -55.9 NC_005261.1 + 19329 0.66 0.916997
Target:  5'- aGUCGUAG-CGcGCACGugccagcAGCUCGgGGg -3'
miRNA:   3'- -CAGCGUCuGCaUGUGCu------UCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 29034 0.66 0.911156
Target:  5'- gGUUGgGGAUG-ACACGggGgCCGCc- -3'
miRNA:   3'- -CAGCgUCUGCaUGUGCuuCgGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 20075 0.67 0.875626
Target:  5'- uGUCGCuGACGUcugaguauaaaucCGCGggGgcuUCCGCGGc -3'
miRNA:   3'- -CAGCGuCUGCAu------------GUGCuuC---GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 47850 0.67 0.871278
Target:  5'- cGUCGCGG-CGUGgccgaGCGuAGCCaGCGGc -3'
miRNA:   3'- -CAGCGUCuGCAUg----UGCuUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 20333 0.67 0.871278
Target:  5'- -cCGCGcACGa--GCGAcGCCCGCGGc -3'
miRNA:   3'- caGCGUcUGCaugUGCUuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 137912 0.67 0.871278
Target:  5'- cUCGCGGGCcc-CGCGAgcgGGCCCggcuGCGGc -3'
miRNA:   3'- cAGCGUCUGcauGUGCU---UCGGG----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 114275 0.67 0.871278
Target:  5'- -aCGCGGugGcGCGCGcGGGCUaCGUGGa -3'
miRNA:   3'- caGCGUCugCaUGUGC-UUCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 89177 0.67 0.871278
Target:  5'- -cCGCGGACaacCugGAGccGCUCGCGGg -3'
miRNA:   3'- caGCGUCUGcauGugCUU--CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 78244 0.67 0.877771
Target:  5'- -cCGCAGGCGUGCgacccgGCGGauaucuucguGGCCCagaugauGCGGc -3'
miRNA:   3'- caGCGUCUGCAUG------UGCU----------UCGGG-------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 60008 0.67 0.878482
Target:  5'- -gCGC-GACGggcagggACACGAagAGCCCGCc- -3'
miRNA:   3'- caGCGuCUGCa------UGUGCU--UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 31401 0.67 0.878482
Target:  5'- -gCGUGGugGUGCucuACGAcccgcuGCCCGgGGa -3'
miRNA:   3'- caGCGUCugCAUG---UGCUu-----CGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 62490 0.67 0.878482
Target:  5'- cGUUGCAGAgGUcgaACG-GGCCCGUGu -3'
miRNA:   3'- -CAGCGUCUgCAug-UGCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 67339 0.67 0.878482
Target:  5'- -cCGCAGGaacaGCGCcGGGCCCGCGa -3'
miRNA:   3'- caGCGUCUgca-UGUGcUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 57659 0.67 0.885468
Target:  5'- -aCGCccccgAGAC-UGCGCGAgcgccAGCCgGCGGg -3'
miRNA:   3'- caGCG-----UCUGcAUGUGCU-----UCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 69193 0.67 0.885468
Target:  5'- cGUCGCGGACGcgGCcaACGAcGUCCucCGGg -3'
miRNA:   3'- -CAGCGUCUGCa-UG--UGCUuCGGGc-GCC- -5'
23604 5' -55.9 NC_005261.1 + 75622 0.67 0.885468
Target:  5'- cGUCGCGuACGUGgACGAcguccaccgcgcGGCCgGCGc -3'
miRNA:   3'- -CAGCGUcUGCAUgUGCU------------UCGGgCGCc -5'
23604 5' -55.9 NC_005261.1 + 34206 0.67 0.871278
Target:  5'- --gGCAGACGgcgcgucggACGCGGAcGCagaCGCGGc -3'
miRNA:   3'- cagCGUCUGCa--------UGUGCUU-CGg--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.