miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 87743 1.11 0.002124
Target:  5'- cGUCGCAGACGUACACGAAGCCCGCGGg -3'
miRNA:   3'- -CAGCGUCUGCAUGUGCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 67469 0.83 0.163906
Target:  5'- -aCGCccGCGUACAgGAAGCCCGCGGc -3'
miRNA:   3'- caGCGucUGCAUGUgCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 29417 0.82 0.176778
Target:  5'- -aCGCGG-CGgcCGCGggGCCCGCGGc -3'
miRNA:   3'- caGCGUCuGCauGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 50082 0.82 0.176778
Target:  5'- aGUCGCAGAugaccaCGUGCACGcuGCCCGCGc -3'
miRNA:   3'- -CAGCGUCU------GCAUGUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 83567 0.82 0.176778
Target:  5'- --gGCGGGCGUGCccGCGgcGCCCGCGGc -3'
miRNA:   3'- cagCGUCUGCAUG--UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 31295 0.81 0.220904
Target:  5'- aUCGCGGcccgcCGccGCGCGggGCCCGCGGg -3'
miRNA:   3'- cAGCGUCu----GCa-UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 109852 0.79 0.261436
Target:  5'- cGUUGguGGCGgcuccuggggGCAgCGggGCCCGCGGg -3'
miRNA:   3'- -CAGCguCUGCa---------UGU-GCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 51381 0.78 0.293275
Target:  5'- -gCGCAGGcCGUGCGCGAacuccgcgagcggAGCCCGCGc -3'
miRNA:   3'- caGCGUCU-GCAUGUGCU-------------UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 44675 0.78 0.314937
Target:  5'- -gCGCcuggAGACGUACcucGCGGAGCUCGCGGc -3'
miRNA:   3'- caGCG----UCUGCAUG---UGCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 93898 0.78 0.322179
Target:  5'- gGUCGcCAGcgacuGCGgGCGCGgcGCCCGCGGg -3'
miRNA:   3'- -CAGC-GUC-----UGCaUGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 92606 0.77 0.337032
Target:  5'- cUCGCGGcGCGUGC-CGggGCCC-CGGg -3'
miRNA:   3'- cAGCGUC-UGCAUGuGCuuCGGGcGCC- -5'
23604 5' -55.9 NC_005261.1 + 29530 0.77 0.368212
Target:  5'- -cUGCAGA---GCGCGAAGCUCGCGGg -3'
miRNA:   3'- caGCGUCUgcaUGUGCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 13669 0.76 0.384528
Target:  5'- -cCGCGGGgGggGCGCGggGCgCGCGGg -3'
miRNA:   3'- caGCGUCUgCa-UGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 64500 0.76 0.392863
Target:  5'- -gCGCGG--GUGCuCGggGCCCGCGGg -3'
miRNA:   3'- caGCGUCugCAUGuGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 66033 0.76 0.392863
Target:  5'- cGUCGUAGucgGCGgcCACGGccagccccgGGCCCGCGGu -3'
miRNA:   3'- -CAGCGUC---UGCauGUGCU---------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 56156 0.76 0.409882
Target:  5'- --gGguGGCGgcaGCgGCGggGCCCGCGGg -3'
miRNA:   3'- cagCguCUGCa--UG-UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 71403 0.75 0.427352
Target:  5'- cGUgGUAGGCGgcguccgGCGCGggGCCCGgccCGGg -3'
miRNA:   3'- -CAgCGUCUGCa------UGUGCuuCGGGC---GCC- -5'
23604 5' -55.9 NC_005261.1 + 71788 0.75 0.436251
Target:  5'- cUCGCAGcUGaGCGCGGcccGGCCCGUGGg -3'
miRNA:   3'- cAGCGUCuGCaUGUGCU---UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 33612 0.75 0.436251
Target:  5'- -gCGCGGGCG---GCGggGCCCGgGGg -3'
miRNA:   3'- caGCGUCUGCaugUGCuuCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 37004 0.75 0.436251
Target:  5'- -cCGCGGGC-UGCGCGggGCCaguuuGCGGg -3'
miRNA:   3'- caGCGUCUGcAUGUGCuuCGGg----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.