miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 12763 0.73 0.530518
Target:  5'- gGUCGUAGGCGgcggugGCGgGggGCUCGuCGGc -3'
miRNA:   3'- -CAGCGUCUGCa-----UGUgCuuCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 16775 0.73 0.540386
Target:  5'- cGUCGUccguGGgGUAgGCGAAGCCCGCcaGGa -3'
miRNA:   3'- -CAGCGu---CUgCAUgUGCUUCGGGCG--CC- -5'
23604 5' -55.9 NC_005261.1 + 12303 0.73 0.540386
Target:  5'- -cCGCGGGCacggGCGCGuAGCCgGCGGg -3'
miRNA:   3'- caGCGUCUGca--UGUGCuUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 116518 0.73 0.540386
Target:  5'- -cCGCGG-CG-GCGCGAGGCCCGCc- -3'
miRNA:   3'- caGCGUCuGCaUGUGCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 81595 0.73 0.550314
Target:  5'- cUCGCcGAcCGUAUcCGgcGCCCGCGGc -3'
miRNA:   3'- cAGCGuCU-GCAUGuGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 119038 0.73 0.560299
Target:  5'- cGUCGCcGACGguaACGc-GCCCGCGGc -3'
miRNA:   3'- -CAGCGuCUGCaugUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 118721 0.73 0.560299
Target:  5'- cGUCGCGGGCGgGCACGgcGUCgCGCu- -3'
miRNA:   3'- -CAGCGUCUGCaUGUGCuuCGG-GCGcc -5'
23604 5' -55.9 NC_005261.1 + 33743 0.73 0.570332
Target:  5'- cUCGCGcGGCGccgggGCcgggcccgcucGCGggGCCCGCGGc -3'
miRNA:   3'- cAGCGU-CUGCa----UG-----------UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49269 0.73 0.570332
Target:  5'- -gCGCGcACGUccgcgaggaagGCGCaGAAGCCCGCGGc -3'
miRNA:   3'- caGCGUcUGCA-----------UGUG-CUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 118890 0.72 0.580409
Target:  5'- -cCGCGGGCGcGCugGuGGCCUGCGu -3'
miRNA:   3'- caGCGUCUGCaUGugCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 58671 0.72 0.580409
Target:  5'- -gCGCGGugGUacgGCAgGAGGCCCG-GGc -3'
miRNA:   3'- caGCGUCugCA---UGUgCUUCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 134542 0.72 0.580409
Target:  5'- -gCGCAGACGUgaccgccccuuGCugGGcGGCgCCGCGGc -3'
miRNA:   3'- caGCGUCUGCA-----------UGugCU-UCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 75192 0.72 0.590523
Target:  5'- uGUCGCGGACcuuCAUGgcGgCCGCGGu -3'
miRNA:   3'- -CAGCGUCUGcauGUGCuuCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 73720 0.72 0.600667
Target:  5'- -cCGCGGucgGCGUGCGCGcuuGCgCGCGGg -3'
miRNA:   3'- caGCGUC---UGCAUGUGCuu-CGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132563 0.72 0.600667
Target:  5'- -gCGCAGuACGgcUGCGAAgacgucggcgcGCCCGCGGa -3'
miRNA:   3'- caGCGUC-UGCauGUGCUU-----------CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49782 0.72 0.609816
Target:  5'- -aCGCGGACGUcgcgccaGCGCGAGacgucGCCCuccGCGGg -3'
miRNA:   3'- caGCGUCUGCA-------UGUGCUU-----CGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 106614 0.72 0.610833
Target:  5'- cGUCcCAGACGc-CGCGGAGCCgCGCGa -3'
miRNA:   3'- -CAGcGUCUGCauGUGCUUCGG-GCGCc -5'
23604 5' -55.9 NC_005261.1 + 93469 0.72 0.610833
Target:  5'- -gCGCGGugcCGgggcGCGCGucGCCCGCGGc -3'
miRNA:   3'- caGCGUCu--GCa---UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 134038 0.72 0.614905
Target:  5'- cUCGCGGccauggccggccacgGCccGUACACGAAGCUCGCGcGg -3'
miRNA:   3'- cAGCGUC---------------UG--CAUGUGCUUCGGGCGC-C- -5'
23604 5' -55.9 NC_005261.1 + 15157 0.72 0.614905
Target:  5'- -cCGCGGugGgggugggcguagcgGCgGCGgcGCCCGCGGg -3'
miRNA:   3'- caGCGUCugCa-------------UG-UGCuuCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.