miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 49461 0.72 0.631207
Target:  5'- -cCGCggaAGGCGgGCGCGcAGGCCgCGCGGa -3'
miRNA:   3'- caGCG---UCUGCaUGUGC-UUCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 104295 0.72 0.631207
Target:  5'- cUCGCAGGCccGCGCGcgcucaaaGAGCgCGCGGa -3'
miRNA:   3'- cAGCGUCUGcaUGUGC--------UUCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 48045 0.72 0.631207
Target:  5'- -aCGCGcGCGcGguCGggGCCCGCGGc -3'
miRNA:   3'- caGCGUcUGCaUguGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 2759 0.72 0.631207
Target:  5'- cGUCGCGG-CGgGCcuCGAGGCCCGCc- -3'
miRNA:   3'- -CAGCGUCuGCaUGu-GCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 23457 0.72 0.631207
Target:  5'- --gGCAGAag-GCGCcAGGCCCGCGGc -3'
miRNA:   3'- cagCGUCUgcaUGUGcUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 27361 0.71 0.641399
Target:  5'- -gCGcCGGACcgGCGCGAGGCCgGUGGg -3'
miRNA:   3'- caGC-GUCUGcaUGUGCUUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 126507 0.71 0.641399
Target:  5'- -cCGCAGGCGgucugcCugGgcGCCCGCGc -3'
miRNA:   3'- caGCGUCUGCau----GugCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 90466 0.71 0.651583
Target:  5'- -gCGCGcACGUGCGCGAgAGCCUGCu- -3'
miRNA:   3'- caGCGUcUGCAUGUGCU-UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 103511 0.71 0.651583
Target:  5'- -cCGCGGACG---GCGgcGUCCGCGGc -3'
miRNA:   3'- caGCGUCUGCaugUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 91402 0.71 0.651583
Target:  5'- cGUCGCgcccggcgaGGACGUggaGCGCGAcGCCgcCGCGGu -3'
miRNA:   3'- -CAGCG---------UCUGCA---UGUGCUuCGG--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 63023 0.71 0.651583
Target:  5'- -gCGCGGGCGc---CGgcGCCCGCGGc -3'
miRNA:   3'- caGCGUCUGCauguGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 104821 0.71 0.661752
Target:  5'- -cCGCAGcgGCGU-CGCGggGCCgcgccaCGCGGa -3'
miRNA:   3'- caGCGUC--UGCAuGUGCuuCGG------GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 16185 0.71 0.661752
Target:  5'- cGUgGCGGGgGUGgGCGggGgCCGCGu -3'
miRNA:   3'- -CAgCGUCUgCAUgUGCuuCgGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 86438 0.71 0.661752
Target:  5'- aUCGCcaGGugGUccaGCGCGAacuccuGGCCCGCGc -3'
miRNA:   3'- cAGCG--UCugCA---UGUGCU------UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 85004 0.71 0.661752
Target:  5'- -gUGCAuGACGgcCGCGggGUCgCGCGGc -3'
miRNA:   3'- caGCGU-CUGCauGUGCuuCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 53092 0.71 0.661752
Target:  5'- -cCGCAGGaagGCACGcAGCgCCGCGGc -3'
miRNA:   3'- caGCGUCUgcaUGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 1717 0.71 0.671898
Target:  5'- cUCGCGcGGCG-GCACG-GGCaCCGCGGu -3'
miRNA:   3'- cAGCGU-CUGCaUGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 122307 0.71 0.671898
Target:  5'- -cCGCAGGCG-ACGCccgGGCCgGCGGu -3'
miRNA:   3'- caGCGUCUGCaUGUGcu-UCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 38918 0.71 0.671898
Target:  5'- -gCGCGGGCccGCGCGccAAGCCgGCGGc -3'
miRNA:   3'- caGCGUCUGcaUGUGC--UUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49526 0.71 0.682011
Target:  5'- gGUCGCGGGCcaGC-CGccGUCCGCGGc -3'
miRNA:   3'- -CAGCGUCUGcaUGuGCuuCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.