miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 44027 0.71 0.682011
Target:  5'- --gGCGGGCGgccgccGCGCGgcGgCCGCGGg -3'
miRNA:   3'- cagCGUCUGCa-----UGUGCuuCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49526 0.71 0.682011
Target:  5'- gGUCGCGGGCcaGC-CGccGUCCGCGGc -3'
miRNA:   3'- -CAGCGUCUGcaUGuGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 131748 0.71 0.692084
Target:  5'- -aCGCGGACG-GCACGccGGCCggCGCGGc -3'
miRNA:   3'- caGCGUCUGCaUGUGCu-UCGG--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 37987 0.71 0.692084
Target:  5'- uUCGCguGGACGcgcUACGCGgcGCCCGaGGa -3'
miRNA:   3'- cAGCG--UCUGC---AUGUGCuuCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 45622 0.71 0.692084
Target:  5'- -gCGCGG-CGcgGCGCGGcgGGCCCGCGc -3'
miRNA:   3'- caGCGUCuGCa-UGUGCU--UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 32332 0.71 0.692084
Target:  5'- -gCGCccGGCGUggccugggACGCGGaccagGGCCCGCGGg -3'
miRNA:   3'- caGCGu-CUGCA--------UGUGCU-----UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 59107 0.71 0.692084
Target:  5'- cUCGCAGGCGcGCGCGA-GCuCCcCGGc -3'
miRNA:   3'- cAGCGUCUGCaUGUGCUuCG-GGcGCC- -5'
23604 5' -55.9 NC_005261.1 + 14450 0.7 0.702107
Target:  5'- cUCGCgGGGCGcGCgGCGGAGCUCGCGc -3'
miRNA:   3'- cAGCG-UCUGCaUG-UGCUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 71960 0.7 0.702107
Target:  5'- -gCGUcGGCGcgggGCGCGGAGCgCGCGGc -3'
miRNA:   3'- caGCGuCUGCa---UGUGCUUCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 55735 0.7 0.702107
Target:  5'- uGUCGCGGGCGUGCugcCGGacGGCCucgaCGCGc -3'
miRNA:   3'- -CAGCGUCUGCAUGu--GCU--UCGG----GCGCc -5'
23604 5' -55.9 NC_005261.1 + 97177 0.7 0.721968
Target:  5'- gGUCGCGGGCGccgGC-CGGgccgcggccggaAGCgCCGCGGc -3'
miRNA:   3'- -CAGCGUCUGCa--UGuGCU------------UCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 21867 0.7 0.721968
Target:  5'- cUCGCGcucGCGaACGCGc-GCCCGCGGg -3'
miRNA:   3'- cAGCGUc--UGCaUGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 1116 0.7 0.721968
Target:  5'- -aCGCGGACGacgaggaggACGCGGAGgaCGCGGa -3'
miRNA:   3'- caGCGUCUGCa--------UGUGCUUCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 97823 0.7 0.721968
Target:  5'- -cCGCAGACGgcgGCaaaaACGggGgCgGCGGg -3'
miRNA:   3'- caGCGUCUGCa--UG----UGCuuCgGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 37225 0.7 0.731789
Target:  5'- -cCGCGGGCuUGCGCGGcgcGGCgCGUGGa -3'
miRNA:   3'- caGCGUCUGcAUGUGCU---UCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 2623 0.7 0.731789
Target:  5'- -cCGcCGGGCG-GCAUGggGCCCagcacGCGGg -3'
miRNA:   3'- caGC-GUCUGCaUGUGCuuCGGG-----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 48671 0.7 0.731789
Target:  5'- -gCGCGGcaACGgcgACuACG-GGCCCGCGGg -3'
miRNA:   3'- caGCGUC--UGCa--UG-UGCuUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 34932 0.7 0.731789
Target:  5'- -aCGCgggGGGCGgccgGCGCGAcccgGGCCCgGCGGc -3'
miRNA:   3'- caGCG---UCUGCa---UGUGCU----UCGGG-CGCC- -5'
23604 5' -55.9 NC_005261.1 + 55144 0.7 0.738613
Target:  5'- -cCGCaAGAUGUgcgcGCGCGAgcgccgccgccggcGGCUCGCGGg -3'
miRNA:   3'- caGCG-UCUGCA----UGUGCU--------------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 19270 0.7 0.740555
Target:  5'- -gCGCGGGuacgccagcgucuCGUACGCGAcgacGCCCGCGc -3'
miRNA:   3'- caGCGUCU-------------GCAUGUGCUu---CGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.