miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 97624 0.66 0.916997
Target:  5'- --aGCGGGCGgagcGgGCGGAGCgggCGCGGg -3'
miRNA:   3'- cagCGUCUGCa---UgUGCUUCGg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 121166 0.66 0.916997
Target:  5'- gGUUGCccGGGCGcucggUGCACGGggccggggccgGGCCCGgGGc -3'
miRNA:   3'- -CAGCG--UCUGC-----AUGUGCU-----------UCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 132001 0.66 0.916997
Target:  5'- aGUCGCGGACGgcgACAacuGGgCCGCc- -3'
miRNA:   3'- -CAGCGUCUGCa--UGUgcuUCgGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 132845 0.66 0.916997
Target:  5'- -aCGCGGcCGUcuacacGCACGGgcacAGCCUGCGc -3'
miRNA:   3'- caGCGUCuGCA------UGUGCU----UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 1567 0.66 0.916997
Target:  5'- -cCGCAG-CG-GCGCGccGAGCCCccaGCGGu -3'
miRNA:   3'- caGCGUCuGCaUGUGC--UUCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 118927 0.66 0.916997
Target:  5'- -cCGCGGGCGcggcgccGCGCGGcuGgCCGCGGc -3'
miRNA:   3'- caGCGUCUGCa------UGUGCUu-CgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 105978 0.66 0.916997
Target:  5'- -gCGCGG-CGUcgACGccGCCCGCGa -3'
miRNA:   3'- caGCGUCuGCAugUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 102951 0.66 0.916997
Target:  5'- -cUGCGGcgGCGgcCGCG-GGCgCCGCGGg -3'
miRNA:   3'- caGCGUC--UGCauGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 47584 0.66 0.916997
Target:  5'- -gCGCAGagccgcGCGcGCGCGAGGgagccgcccCCUGCGGg -3'
miRNA:   3'- caGCGUC------UGCaUGUGCUUC---------GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 28294 0.66 0.916997
Target:  5'- -cCGCGGuCGUcuccuucguuCGCGgcGCCCGCGc -3'
miRNA:   3'- caGCGUCuGCAu---------GUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 23685 0.66 0.911156
Target:  5'- --aGCGaGCGcccccgACGCGAGGCCCGCc- -3'
miRNA:   3'- cagCGUcUGCa-----UGUGCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 48115 0.66 0.911156
Target:  5'- -aCG-AGACGgGCAUGgcGCgCGCGGg -3'
miRNA:   3'- caGCgUCUGCaUGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 74949 0.66 0.911156
Target:  5'- -gCGCGGGCGcGCucggcgcgcuCGAGGCCgCGCGc -3'
miRNA:   3'- caGCGUCUGCaUGu---------GCUUCGG-GCGCc -5'
23604 5' -55.9 NC_005261.1 + 130215 0.66 0.911156
Target:  5'- -cUGCAGGCGgaagaGCGucGGCCCGCu- -3'
miRNA:   3'- caGCGUCUGCaug--UGCu-UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 136815 0.66 0.911156
Target:  5'- cUCGUAGcCGUAgACGgcGCCCccGCGc -3'
miRNA:   3'- cAGCGUCuGCAUgUGCuuCGGG--CGCc -5'
23604 5' -55.9 NC_005261.1 + 37300 0.66 0.911156
Target:  5'- cUCGCGGAuCGccccccGCACGAGGa-CGCGGu -3'
miRNA:   3'- cAGCGUCU-GCa-----UGUGCUUCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 57450 0.66 0.911156
Target:  5'- -gCGCGacGGCGUcCGCGAAGagcaCGCGGa -3'
miRNA:   3'- caGCGU--CUGCAuGUGCUUCgg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 64751 0.66 0.911156
Target:  5'- cGUUGCGGAaGUugGCcucGGccAGCUCGCGGc -3'
miRNA:   3'- -CAGCGUCUgCAugUG---CU--UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 121836 0.66 0.911156
Target:  5'- -cCGCGGcgGCGcaccgGCGCcagcAGCCCGCGGc -3'
miRNA:   3'- caGCGUC--UGCa----UGUGcu--UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 4833 0.66 0.911156
Target:  5'- -gCGCAGGCG---GCGgcGUCCGCGc -3'
miRNA:   3'- caGCGUCUGCaugUGCuuCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.