miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 29034 0.66 0.911156
Target:  5'- gGUUGgGGAUG-ACACGggGgCCGCc- -3'
miRNA:   3'- -CAGCgUCUGCaUGUGCuuCgGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 65809 0.66 0.910559
Target:  5'- gGUCGgggugccCGGGCGgcgGCGCGAAGCugcccgagugCCGCGa -3'
miRNA:   3'- -CAGC-------GUCUGCa--UGUGCUUCG----------GGCGCc -5'
23604 5' -55.9 NC_005261.1 + 9625 0.66 0.907538
Target:  5'- --gGCAGGCGggggugggggcugggUGgGCGggGCCCacucggGCGGg -3'
miRNA:   3'- cagCGUCUGC---------------AUgUGCuuCGGG------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 95445 0.66 0.907538
Target:  5'- -aCGCAGAgcacgggccugagccUGUcggcGCugGAgaagaucaaGGCCCGCGGc -3'
miRNA:   3'- caGCGUCU---------------GCA----UGugCU---------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 122143 0.66 0.905079
Target:  5'- --gGUGGugGUGCACGGccgacgccAGCucgaCCGCGGc -3'
miRNA:   3'- cagCGUCugCAUGUGCU--------UCG----GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 90196 0.66 0.905079
Target:  5'- -aCGCAGG-GaGCGCGggGgCgGCGGa -3'
miRNA:   3'- caGCGUCUgCaUGUGCuuCgGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 107949 0.66 0.905079
Target:  5'- -aCGUAGucCGUGCGCGG---CCGCGGg -3'
miRNA:   3'- caGCGUCu-GCAUGUGCUucgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132171 0.66 0.905079
Target:  5'- -cUGCAGGCa-GCGCGGgcgggGGCCCGCa- -3'
miRNA:   3'- caGCGUCUGcaUGUGCU-----UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 74880 0.66 0.905079
Target:  5'- -aCGCGG-CGgcgGCgGCGGAGUCgGCGGc -3'
miRNA:   3'- caGCGUCuGCa--UG-UGCUUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 84343 0.66 0.905079
Target:  5'- cUCGCGcACGcGCcaaagucgaagGCGccGCCCGCGGg -3'
miRNA:   3'- cAGCGUcUGCaUG-----------UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 98435 0.66 0.905079
Target:  5'- -cUGCGGACccgggccgGUAgGCGgcGCCCGCa- -3'
miRNA:   3'- caGCGUCUG--------CAUgUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 99803 0.66 0.905079
Target:  5'- -gCGCGGAUGgcgaacaGCGCGccGUCCGcCGGg -3'
miRNA:   3'- caGCGUCUGCa------UGUGCuuCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 94392 0.66 0.903211
Target:  5'- -gCGCGgcggcggccuccucGACGaaggGCGCGAcGUCCGCGGc -3'
miRNA:   3'- caGCGU--------------CUGCa---UGUGCUuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 75932 0.66 0.898771
Target:  5'- -aCGUGGcccGCGUGUACGAGGCCUGCc- -3'
miRNA:   3'- caGCGUC---UGCAUGUGCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 80051 0.66 0.898771
Target:  5'- cGUCGCcacuGGCGgcggGCGCGggGggCGUGGg -3'
miRNA:   3'- -CAGCGu---CUGCa---UGUGCuuCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 88905 0.66 0.898771
Target:  5'- --gGCGGACGUguacuuuuacgACACGc-GCCCGCa- -3'
miRNA:   3'- cagCGUCUGCA-----------UGUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 95378 0.66 0.898771
Target:  5'- cUCGCGGcCccccgGCGCGccGCUCGCGGc -3'
miRNA:   3'- cAGCGUCuGca---UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 21203 0.66 0.898771
Target:  5'- -cCGCGGACGcUGgccccggcCGCGAcggcgGGCCCGuCGGc -3'
miRNA:   3'- caGCGUCUGC-AU--------GUGCU-----UCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 37356 0.66 0.898771
Target:  5'- -cCGCGGGCgGUGCuCGccGCCCgagGCGGc -3'
miRNA:   3'- caGCGUCUG-CAUGuGCuuCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 62865 0.66 0.898771
Target:  5'- -aCGCGG-CGgccuuuuaUGCGCGGcgcAGCCCGCGc -3'
miRNA:   3'- caGCGUCuGC--------AUGUGCU---UCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.