miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 60046 0.66 0.898771
Target:  5'- -gCGCcGACGgcgGCgGCGAagagcggcggccGGUCCGCGGg -3'
miRNA:   3'- caGCGuCUGCa--UG-UGCU------------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 62865 0.66 0.898771
Target:  5'- -aCGCGG-CGgccuuuuaUGCGCGGcgcAGCCCGCGc -3'
miRNA:   3'- caGCGUCuGC--------AUGUGCU---UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 99011 0.66 0.898771
Target:  5'- cGUCGCGaGCGgcgGCGCGGcGGCgCGCGc -3'
miRNA:   3'- -CAGCGUcUGCa--UGUGCU-UCGgGCGCc -5'
23604 5' -55.9 NC_005261.1 + 37356 0.66 0.898771
Target:  5'- -cCGCGGGCgGUGCuCGccGCCCgagGCGGc -3'
miRNA:   3'- caGCGUCUG-CAUGuGCuuCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 21203 0.66 0.898771
Target:  5'- -cCGCGGACGcUGgccccggcCGCGAcggcgGGCCCGuCGGc -3'
miRNA:   3'- caGCGUCUGC-AU--------GUGCU-----UCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 95378 0.66 0.898771
Target:  5'- cUCGCGGcCccccgGCGCGccGCUCGCGGc -3'
miRNA:   3'- cAGCGUCuGca---UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 88905 0.66 0.898771
Target:  5'- --gGCGGACGUguacuuuuacgACACGc-GCCCGCa- -3'
miRNA:   3'- cagCGUCUGCA-----------UGUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 80051 0.66 0.898771
Target:  5'- cGUCGCcacuGGCGgcggGCGCGggGggCGUGGg -3'
miRNA:   3'- -CAGCGu---CUGCa---UGUGCuuCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 75932 0.66 0.898771
Target:  5'- -aCGUGGcccGCGUGUACGAGGCCUGCc- -3'
miRNA:   3'- caGCGUC---UGCAUGUGCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 68732 0.66 0.894875
Target:  5'- --gGCGGGCGccgGCGggaagaagcgcccgcCGggGCgCCGCGGa -3'
miRNA:   3'- cagCGUCUGCa--UGU---------------GCuuCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 82364 0.66 0.892897
Target:  5'- cGUCgGCGcGCGcGCGCGccgccagcgccgcccAGCCCGCGGg -3'
miRNA:   3'- -CAG-CGUcUGCaUGUGCu--------------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 44613 0.66 0.892233
Target:  5'- aUCGCgcaccaggAGGCGUGCAggucggaggaGGAGCuCUGCGGg -3'
miRNA:   3'- cAGCG--------UCUGCAUGUg---------CUUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 58861 0.66 0.892233
Target:  5'- cGUCGUAGugGaaGCGCugggGAGGUCCggGCGGg -3'
miRNA:   3'- -CAGCGUCugCa-UGUG----CUUCGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 70591 0.66 0.892233
Target:  5'- -gCGCAGcgGCGUGCGCcc-GCCCGaagaGGg -3'
miRNA:   3'- caGCGUC--UGCAUGUGcuuCGGGCg---CC- -5'
23604 5' -55.9 NC_005261.1 + 126961 0.66 0.892233
Target:  5'- -gCGgGGGCGgcaGCGCGAA-CCgCGCGGg -3'
miRNA:   3'- caGCgUCUGCa--UGUGCUUcGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 133115 0.66 0.892233
Target:  5'- -gCGCGGccuuccacgGCGUGCGCGucucCCUGCGGu -3'
miRNA:   3'- caGCGUC---------UGCAUGUGCuuc-GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 46734 0.66 0.892233
Target:  5'- -aCGcCGGcGCGUGCACGugccgcAGCCCGCc- -3'
miRNA:   3'- caGC-GUC-UGCAUGUGCu-----UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 64110 0.66 0.892233
Target:  5'- -gUGCGGcACGggcgGCACGu-GCCgCGCGGc -3'
miRNA:   3'- caGCGUC-UGCa---UGUGCuuCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 100941 0.66 0.892233
Target:  5'- -cUGCAGgcccGCGUcCACGgcGCgCGCGGu -3'
miRNA:   3'- caGCGUC----UGCAuGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 30249 0.66 0.892233
Target:  5'- -gCGCGGuacucgacGCGcgGCGCGGcGGCCCGCGc -3'
miRNA:   3'- caGCGUC--------UGCa-UGUGCU-UCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.