miRNA display CGI


Results 1 - 20 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 229 0.67 0.871278
Target:  5'- cUCGCGGGCcc-CGCGAgcgGGCCCggcuGCGGc -3'
miRNA:   3'- cAGCGUCUGcauGUGCU---UCGGG----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 449 0.68 0.806509
Target:  5'- -aCGgGGACGggggcCGCGAcGGCCgGCGGg -3'
miRNA:   3'- caGCgUCUGCau---GUGCU-UCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 525 0.67 0.856236
Target:  5'- -gCGCGGGCGgGCGgGggGCaggGCGGa -3'
miRNA:   3'- caGCGUCUGCaUGUgCuuCGgg-CGCC- -5'
23604 5' -55.9 NC_005261.1 + 1116 0.7 0.721968
Target:  5'- -aCGCGGACGacgaggaggACGCGGAGgaCGCGGa -3'
miRNA:   3'- caGCGUCUGCa--------UGUGCUUCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 1567 0.66 0.916997
Target:  5'- -cCGCAG-CG-GCGCGccGAGCCCccaGCGGu -3'
miRNA:   3'- caGCGUCuGCaUGUGC--UUCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 1717 0.71 0.671898
Target:  5'- cUCGCGcGGCG-GCACG-GGCaCCGCGGu -3'
miRNA:   3'- cAGCGU-CUGCaUGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 1957 0.69 0.797627
Target:  5'- -gCGCAGguacACGUGCGCcu-GCCCGaCGGc -3'
miRNA:   3'- caGCGUC----UGCAUGUGcuuCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 2063 0.69 0.797627
Target:  5'- --gGCAGAgGUACuCGAccGCgCCGCGGa -3'
miRNA:   3'- cagCGUCUgCAUGuGCUu-CG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 2382 0.68 0.815235
Target:  5'- -cCGCAGcgGCGcGCuggcgGCGAGcgcGCCCGCGGg -3'
miRNA:   3'- caGCGUC--UGCaUG-----UGCUU---CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 2623 0.7 0.731789
Target:  5'- -cCGcCGGGCG-GCAUGggGCCCagcacGCGGg -3'
miRNA:   3'- caGC-GUCUGCaUGUGCuuCGGG-----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 2759 0.72 0.631207
Target:  5'- cGUCGCGG-CGgGCcuCGAGGCCCGCc- -3'
miRNA:   3'- -CAGCGUCuGCaUGu-GCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 3887 0.68 0.840391
Target:  5'- -gCGCAGcucggcgaGCGcgGCGCGGGcGCCCGCGc -3'
miRNA:   3'- caGCGUC--------UGCa-UGUGCUU-CGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 4157 0.66 0.922053
Target:  5'- --aGCAGGCGcgccagcUGCAgGuccgGGCCCGCGa -3'
miRNA:   3'- cagCGUCUGC-------AUGUgCu---UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 4218 0.67 0.871278
Target:  5'- cGUCGCGGcgcGCGUACACcAGGUCCaccaGCGc -3'
miRNA:   3'- -CAGCGUC---UGCAUGUGcUUCGGG----CGCc -5'
23604 5' -55.9 NC_005261.1 + 4476 0.68 0.840391
Target:  5'- cGUCGCGcGGCGc-CGCGGcguAGCCUGCGcGg -3'
miRNA:   3'- -CAGCGU-CUGCauGUGCU---UCGGGCGC-C- -5'
23604 5' -55.9 NC_005261.1 + 4513 0.67 0.856236
Target:  5'- aGUCGCGcGCccGCGCG-GGCgCCGCGGc -3'
miRNA:   3'- -CAGCGUcUGcaUGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 4833 0.66 0.911156
Target:  5'- -gCGCAGGCG---GCGgcGUCCGCGc -3'
miRNA:   3'- caGCGUCUGCaugUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 5125 0.67 0.851565
Target:  5'- -gCGCGGGCGgcccgccggcgcucGCGCGccucGGCCCgGCGGg -3'
miRNA:   3'- caGCGUCUGCa-------------UGUGCu---UCGGG-CGCC- -5'
23604 5' -55.9 NC_005261.1 + 9625 0.66 0.907538
Target:  5'- --gGCAGGCGggggugggggcugggUGgGCGggGCCCacucggGCGGg -3'
miRNA:   3'- cagCGUCUGC---------------AUgUGCuuCGGG------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 12303 0.73 0.540386
Target:  5'- -cCGCGGGCacggGCGCGuAGCCgGCGGg -3'
miRNA:   3'- caGCGUCUGca--UGUGCuUCGGgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.