miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 12763 0.73 0.530518
Target:  5'- gGUCGUAGGCGgcggugGCGgGggGCUCGuCGGc -3'
miRNA:   3'- -CAGCGUCUGCa-----UGUgCuuCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 12937 0.67 0.856236
Target:  5'- uGUCGUAG--GUGCGCuucuGGCCCGCGcGg -3'
miRNA:   3'- -CAGCGUCugCAUGUGcu--UCGGGCGC-C- -5'
23604 5' -55.9 NC_005261.1 + 13669 0.76 0.384528
Target:  5'- -cCGCGGGgGggGCGCGggGCgCGCGGg -3'
miRNA:   3'- caGCGUCUgCa-UGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 14364 0.68 0.823796
Target:  5'- -cCGCGGcCGgggcgGCGCGGuGGCCCGCa- -3'
miRNA:   3'- caGCGUCuGCa----UGUGCU-UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 14450 0.7 0.702107
Target:  5'- cUCGCgGGGCGcGCgGCGGAGCUCGCGc -3'
miRNA:   3'- cAGCG-UCUGCaUG-UGCUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 14803 0.68 0.832184
Target:  5'- -cCGCAGGC-UGCGCac-GUCCGCGGc -3'
miRNA:   3'- caGCGUCUGcAUGUGcuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 14961 0.67 0.86386
Target:  5'- --aGCGGGCGUGCcUGggGCgacugCGCGGc -3'
miRNA:   3'- cagCGUCUGCAUGuGCuuCGg----GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 15157 0.72 0.614905
Target:  5'- -cCGCGGugGgggugggcguagcgGCgGCGgcGCCCGCGGg -3'
miRNA:   3'- caGCGUCugCa-------------UG-UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 15251 0.74 0.482274
Target:  5'- cUCGCAGugGgcCGCGAucGCCCcgGCGGc -3'
miRNA:   3'- cAGCGUCugCauGUGCUu-CGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 16185 0.71 0.661752
Target:  5'- cGUgGCGGGgGUGgGCGggGgCCGCGu -3'
miRNA:   3'- -CAgCGUCUgCAUgUGCuuCgGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 16403 0.69 0.760701
Target:  5'- cGUCGcCGGGCgGUGCGggaGAGGCCCccucgacgGCGGg -3'
miRNA:   3'- -CAGC-GUCUG-CAUGUg--CUUCGGG--------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 16775 0.73 0.540386
Target:  5'- cGUCGUccguGGgGUAgGCGAAGCCCGCcaGGa -3'
miRNA:   3'- -CAGCGu---CUgCAUgUGCUUCGGGCG--CC- -5'
23604 5' -55.9 NC_005261.1 + 17173 0.68 0.823796
Target:  5'- -gCGCGGGCGUGgGC--AGCCCugccGCGGc -3'
miRNA:   3'- caGCGUCUGCAUgUGcuUCGGG----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 18868 0.66 0.922603
Target:  5'- -aUGCAgGGCuUGCA-GGAGCCCGCGc -3'
miRNA:   3'- caGCGU-CUGcAUGUgCUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 19270 0.7 0.740555
Target:  5'- -gCGCGGGuacgccagcgucuCGUACGCGAcgacGCCCGCGc -3'
miRNA:   3'- caGCGUCU-------------GCAUGUGCUu---CGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 19329 0.66 0.916997
Target:  5'- aGUCGUAG-CGcGCACGugccagcAGCUCGgGGg -3'
miRNA:   3'- -CAGCGUCuGCaUGUGCu------UCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 19510 0.68 0.823796
Target:  5'- -gUGCAG--GUACGCGAGGCcCCGCa- -3'
miRNA:   3'- caGCGUCugCAUGUGCUUCG-GGCGcc -5'
23604 5' -55.9 NC_005261.1 + 20075 0.67 0.875626
Target:  5'- uGUCGCuGACGUcugaguauaaaucCGCGggGgcuUCCGCGGc -3'
miRNA:   3'- -CAGCGuCUGCAu------------GUGCuuC---GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 20333 0.67 0.871278
Target:  5'- -cCGCGcACGa--GCGAcGCCCGCGGc -3'
miRNA:   3'- caGCGUcUGCaugUGCUuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 20448 0.66 0.922603
Target:  5'- -gCGCAGACGUgcccGCGCGGguguGGCgCUuccuuGCGGa -3'
miRNA:   3'- caGCGUCUGCA----UGUGCU----UCG-GG-----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.