miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 21203 0.66 0.898771
Target:  5'- -cCGCGGACGcUGgccccggcCGCGAcggcgGGCCCGuCGGc -3'
miRNA:   3'- caGCGUCUGC-AU--------GUGCU-----UCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 21799 0.68 0.832184
Target:  5'- -cCGCAGcCGccgGC-CGGgccgGGCCCGCGGc -3'
miRNA:   3'- caGCGUCuGCa--UGuGCU----UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 21867 0.7 0.721968
Target:  5'- cUCGCGcucGCGaACGCGc-GCCCGCGGg -3'
miRNA:   3'- cAGCGUc--UGCaUGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 23171 0.66 0.898771
Target:  5'- --gGCAGGCGcGCcgggggcgacaGCGAGcGCgCCGCGGg -3'
miRNA:   3'- cagCGUCUGCaUG-----------UGCUU-CG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 23457 0.72 0.631207
Target:  5'- --gGCAGAag-GCGCcAGGCCCGCGGc -3'
miRNA:   3'- cagCGUCUgcaUGUGcUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 23478 0.66 0.916997
Target:  5'- --nGCGGcgaGUGCGCG-GGCCCGCcuGGg -3'
miRNA:   3'- cagCGUCug-CAUGUGCuUCGGGCG--CC- -5'
23604 5' -55.9 NC_005261.1 + 23685 0.66 0.911156
Target:  5'- --aGCGaGCGcccccgACGCGAGGCCCGCc- -3'
miRNA:   3'- cagCGUcUGCa-----UGUGCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 27361 0.71 0.641399
Target:  5'- -gCGcCGGACcgGCGCGAGGCCgGUGGg -3'
miRNA:   3'- caGC-GUCUGcaUGUGCUUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 28182 0.67 0.86386
Target:  5'- cUCGCu-GCGcGC-CGAAGCCgGCGGc -3'
miRNA:   3'- cAGCGucUGCaUGuGCUUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 28294 0.66 0.916997
Target:  5'- -cCGCGGuCGUcuccuucguuCGCGgcGCCCGCGc -3'
miRNA:   3'- caGCGUCuGCAu---------GUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 28641 0.69 0.797627
Target:  5'- -cCGCGGGggagaGUG-ACGAGGCCgGCGGg -3'
miRNA:   3'- caGCGUCUg----CAUgUGCUUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 29034 0.66 0.911156
Target:  5'- gGUUGgGGAUG-ACACGggGgCCGCc- -3'
miRNA:   3'- -CAGCgUCUGCaUGUGCuuCgGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 29208 0.74 0.482274
Target:  5'- -gCGCGGGCGcGCGacUGggGCCCGCGc -3'
miRNA:   3'- caGCGUCUGCaUGU--GCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 29417 0.82 0.176778
Target:  5'- -aCGCGG-CGgcCGCGggGCCCGCGGc -3'
miRNA:   3'- caGCGUCuGCauGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 29465 0.66 0.892233
Target:  5'- -aCGCGGGgaagcaGUACGCGgcGCUgGUGGa -3'
miRNA:   3'- caGCGUCUg-----CAUGUGCuuCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 29530 0.77 0.368212
Target:  5'- -cUGCAGA---GCGCGAAGCUCGCGGg -3'
miRNA:   3'- caGCGUCUgcaUGUGCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 29807 0.69 0.788596
Target:  5'- -gCGCcGGCG-GCGCGGGcGCCCGCGc -3'
miRNA:   3'- caGCGuCUGCaUGUGCUU-CGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 30139 0.66 0.922603
Target:  5'- -aCGCGGugGaGCGCGcgcGCCUuaGCGGc -3'
miRNA:   3'- caGCGUCugCaUGUGCuu-CGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 30249 0.66 0.892233
Target:  5'- -gCGCGGuacucgacGCGcgGCGCGGcGGCCCGCGc -3'
miRNA:   3'- caGCGUC--------UGCa-UGUGCU-UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 30688 0.75 0.463572
Target:  5'- -aCGgGGACGgggACgGgGAGGCCCGCGGg -3'
miRNA:   3'- caGCgUCUGCa--UG-UgCUUCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.