miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 30946 0.69 0.760701
Target:  5'- cUCGgGGGCGgGCcuCGAGGCCCGCc- -3'
miRNA:   3'- cAGCgUCUGCaUGu-GCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 31295 0.81 0.220904
Target:  5'- aUCGCGGcccgcCGccGCGCGggGCCCGCGGg -3'
miRNA:   3'- cAGCGUCu----GCa-UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 31401 0.67 0.878482
Target:  5'- -gCGUGGugGUGCucuACGAcccgcuGCCCGgGGa -3'
miRNA:   3'- caGCGUCugCAUG---UGCUu-----CGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 31753 0.68 0.806509
Target:  5'- cGUCggGCAGGCGcacguguaccUGCGCGccgcggugcuGCCCGCGGc -3'
miRNA:   3'- -CAG--CGUCUGC----------AUGUGCuu--------CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 32068 0.68 0.806509
Target:  5'- -gCGCAGAgCGcgGCGCuGggGCUCGgGGa -3'
miRNA:   3'- caGCGUCU-GCa-UGUG-CuuCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 32332 0.71 0.692084
Target:  5'- -gCGCccGGCGUggccugggACGCGGaccagGGCCCGCGGg -3'
miRNA:   3'- caGCGu-CUGCA--------UGUGCU-----UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 33476 0.74 0.491761
Target:  5'- -cCGCAGcCGggcccgcuCGCGggGCCCGCGa -3'
miRNA:   3'- caGCGUCuGCau------GUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 33612 0.75 0.436251
Target:  5'- -gCGCGGGCG---GCGggGCCCGgGGg -3'
miRNA:   3'- caGCGUCUGCaugUGCuuCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 33743 0.73 0.570332
Target:  5'- cUCGCGcGGCGccgggGCcgggcccgcucGCGggGCCCGCGGc -3'
miRNA:   3'- cAGCGU-CUGCa----UG-----------UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 34206 0.67 0.871278
Target:  5'- --gGCAGACGgcgcgucggACGCGGAcGCagaCGCGGc -3'
miRNA:   3'- cagCGUCUGCa--------UGUGCUU-CGg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 34274 0.68 0.815235
Target:  5'- -cCGUAGACcu-CACGGcGGCCgGCGGg -3'
miRNA:   3'- caGCGUCUGcauGUGCU-UCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 34396 0.67 0.871278
Target:  5'- -gCGCAGGaguuuaucgacCGggugGCGCGcGGCCCGCGc -3'
miRNA:   3'- caGCGUCU-----------GCa---UGUGCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 34528 0.66 0.922603
Target:  5'- uUCGCcguGACGgccCGCG-AGCUCGCGa -3'
miRNA:   3'- cAGCGu--CUGCau-GUGCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 34932 0.7 0.731789
Target:  5'- -aCGCgggGGGCGgccgGCGCGAcccgGGCCCgGCGGc -3'
miRNA:   3'- caGCG---UCUGCa---UGUGCU----UCGGG-CGCC- -5'
23604 5' -55.9 NC_005261.1 + 35032 0.66 0.922053
Target:  5'- gGUCGCuGGCGcGCcgcccuaACGGcGGCCgCGCGGc -3'
miRNA:   3'- -CAGCGuCUGCaUG-------UGCU-UCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 35759 0.74 0.480387
Target:  5'- -cCGCgaAGGCGgcucgggccgagACAgGAGGCCCGCGGg -3'
miRNA:   3'- caGCG--UCUGCa-----------UGUgCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 36628 0.67 0.856236
Target:  5'- -gCGCAcaaACG-GCGCGAAGCCggcgCGCGGg -3'
miRNA:   3'- caGCGUc--UGCaUGUGCUUCGG----GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 36917 0.67 0.847618
Target:  5'- -gCGCugggccgGGACGUACucCGggGCCCuGCGc -3'
miRNA:   3'- caGCG-------UCUGCAUGu-GCuuCGGG-CGCc -5'
23604 5' -55.9 NC_005261.1 + 37004 0.75 0.436251
Target:  5'- -cCGCGGGC-UGCGCGggGCCaguuuGCGGg -3'
miRNA:   3'- caGCGUCUGcAUGUGCuuCGGg----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 37225 0.7 0.731789
Target:  5'- -cCGCGGGCuUGCGCGGcgcGGCgCGUGGa -3'
miRNA:   3'- caGCGUCUGcAUGUGCU---UCGgGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.