miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 37300 0.66 0.911156
Target:  5'- cUCGCGGAuCGccccccGCACGAGGa-CGCGGu -3'
miRNA:   3'- cAGCGUCU-GCa-----UGUGCUUCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 37356 0.66 0.898771
Target:  5'- -cCGCGGGCgGUGCuCGccGCCCgagGCGGc -3'
miRNA:   3'- caGCGUCUG-CAUGuGCuuCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 37987 0.71 0.692084
Target:  5'- uUCGCguGGACGcgcUACGCGgcGCCCGaGGa -3'
miRNA:   3'- cAGCG--UCUGC---AUGUGCuuCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 38132 0.67 0.846025
Target:  5'- -aCGCGGcCGUGCA-GAAGaacuuccccgggacCCCGCGGc -3'
miRNA:   3'- caGCGUCuGCAUGUgCUUC--------------GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 38918 0.71 0.671898
Target:  5'- -gCGCGGGCccGCGCGccAAGCCgGCGGc -3'
miRNA:   3'- caGCGUCUGcaUGUGC--UUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 39019 0.67 0.848411
Target:  5'- -gCGCAGAgCGUcCGCGAgcAGCUccaCGCGGu -3'
miRNA:   3'- caGCGUCU-GCAuGUGCU--UCGG---GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 39936 0.66 0.922053
Target:  5'- cGUCGaaggGGACcgcgaACACGGAGCCCucgcgcaggcucaGCGGg -3'
miRNA:   3'- -CAGCg---UCUGca---UGUGCUUCGGG-------------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 40587 0.74 0.476624
Target:  5'- cUCGCuGACGUucgugugcagcacggACACGAAGCCgcgcugguCGCGGa -3'
miRNA:   3'- cAGCGuCUGCA---------------UGUGCUUCGG--------GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 42179 0.68 0.806509
Target:  5'- -cCGUGGACGcaggGCGCGAGccgcuccacggcGCCgCGCGGg -3'
miRNA:   3'- caGCGUCUGCa---UGUGCUU------------CGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 42807 0.66 0.898771
Target:  5'- -gUGCAGACGUcCGCGGccgcGCCgGcCGGa -3'
miRNA:   3'- caGCGUCUGCAuGUGCUu---CGGgC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 43461 0.68 0.806509
Target:  5'- cGUCGcCGGGCGggugcugGCggaguGCGAGGCCuuCGCGGc -3'
miRNA:   3'- -CAGC-GUCUGCa------UG-----UGCUUCGG--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 43655 0.66 0.898771
Target:  5'- -gCGguGACGUGCucuuCGAGucGCCCaugcaGCGGc -3'
miRNA:   3'- caGCguCUGCAUGu---GCUU--CGGG-----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 43774 0.68 0.806509
Target:  5'- cUCGUgGGGCGgcGCGCGGagGGCgCCGCGGg -3'
miRNA:   3'- cAGCG-UCUGCa-UGUGCU--UCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 44027 0.71 0.682011
Target:  5'- --gGCGGGCGgccgccGCGCGgcGgCCGCGGg -3'
miRNA:   3'- cagCGUCUGCa-----UGUGCuuCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 44263 0.68 0.823796
Target:  5'- -cCGCGGcgcGCGgggGgGCGggGCCCGCc- -3'
miRNA:   3'- caGCGUC---UGCa--UgUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 44298 0.66 0.898771
Target:  5'- --gGCGGGCcaggGC-CGcuGCCCGCGGg -3'
miRNA:   3'- cagCGUCUGca--UGuGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 44613 0.66 0.892233
Target:  5'- aUCGCgcaccaggAGGCGUGCAggucggaggaGGAGCuCUGCGGg -3'
miRNA:   3'- cAGCG--------UCUGCAUGUg---------CUUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 44675 0.78 0.314937
Target:  5'- -gCGCcuggAGACGUACcucGCGGAGCUCGCGGc -3'
miRNA:   3'- caGCG----UCUGCAUG---UGCUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 44964 0.69 0.760701
Target:  5'- -cUGCgGGACGcGCGCGAgGGCCCggGCGGg -3'
miRNA:   3'- caGCG-UCUGCaUGUGCU-UCGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 45622 0.71 0.692084
Target:  5'- -gCGCGG-CGcgGCGCGGcgGGCCCGCGc -3'
miRNA:   3'- caGCGUCuGCa-UGUGCU--UCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.