miRNA display CGI


Results 101 - 120 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 46232 0.69 0.760701
Target:  5'- -gCGUGGACGaGCGCGucgcAGgCCGCGGc -3'
miRNA:   3'- caGCGUCUGCaUGUGCu---UCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 46734 0.66 0.892233
Target:  5'- -aCGcCGGcGCGUGCACGugccgcAGCCCGCc- -3'
miRNA:   3'- caGC-GUC-UGCAUGUGCu-----UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 46803 0.68 0.815235
Target:  5'- cGUCGCGG-CGcGCGCGGauGGCgCGCGc -3'
miRNA:   3'- -CAGCGUCuGCaUGUGCU--UCGgGCGCc -5'
23604 5' -55.9 NC_005261.1 + 46928 0.7 0.741524
Target:  5'- uGUC-CAGGaugGUGCucACGcGGCCCGCGGg -3'
miRNA:   3'- -CAGcGUCUg--CAUG--UGCuUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 47584 0.66 0.916997
Target:  5'- -gCGCAGagccgcGCGcGCGCGAGGgagccgcccCCUGCGGg -3'
miRNA:   3'- caGCGUC------UGCaUGUGCUUC---------GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 47670 0.68 0.806509
Target:  5'- -cCGCAGcgccgaGCGcaGCACGGccGCCCGCGGc -3'
miRNA:   3'- caGCGUC------UGCa-UGUGCUu-CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 47850 0.67 0.871278
Target:  5'- cGUCGCGG-CGUGgccgaGCGuAGCCaGCGGc -3'
miRNA:   3'- -CAGCGUCuGCAUg----UGCuUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 48045 0.72 0.631207
Target:  5'- -aCGCGcGCGcGguCGggGCCCGCGGc -3'
miRNA:   3'- caGCGUcUGCaUguGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 48115 0.66 0.911156
Target:  5'- -aCG-AGACGgGCAUGgcGCgCGCGGg -3'
miRNA:   3'- caGCgUCUGCaUGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 48381 0.74 0.491761
Target:  5'- -gCGCAGGCuGUACuuGggGCUCGCGa -3'
miRNA:   3'- caGCGUCUG-CAUGugCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 48671 0.7 0.731789
Target:  5'- -gCGCGGcaACGgcgACuACG-GGCCCGCGGg -3'
miRNA:   3'- caGCGUC--UGCa--UG-UGCuUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 48793 0.7 0.741524
Target:  5'- aUCGCcggcuccgugAGGcCGUGCGCGgcGUCCGCGa -3'
miRNA:   3'- cAGCG----------UCU-GCAUGUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 49269 0.73 0.570332
Target:  5'- -gCGCGcACGUccgcgaggaagGCGCaGAAGCCCGCGGc -3'
miRNA:   3'- caGCGUcUGCA-----------UGUG-CUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49433 0.69 0.797627
Target:  5'- -gCGCGGAaacaGCGCG-AGCCCGCGc -3'
miRNA:   3'- caGCGUCUgca-UGUGCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 49461 0.72 0.631207
Target:  5'- -cCGCggaAGGCGgGCGCGcAGGCCgCGCGGa -3'
miRNA:   3'- caGCG---UCUGCaUGUGC-UUCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49526 0.71 0.682011
Target:  5'- gGUCGCGGGCcaGC-CGccGUCCGCGGc -3'
miRNA:   3'- -CAGCGUCUGcaUGuGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 49782 0.72 0.609816
Target:  5'- -aCGCGGACGUcgcgccaGCGCGAGacgucGCCCuccGCGGg -3'
miRNA:   3'- caGCGUCUGCA-------UGUGCUU-----CGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 49910 0.75 0.454364
Target:  5'- -aCGCAGACGUuguggcccGCcuCGAGgcGCCCGCGGa -3'
miRNA:   3'- caGCGUCUGCA--------UGu-GCUU--CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 50082 0.82 0.176778
Target:  5'- aGUCGCAGAugaccaCGUGCACGcuGCCCGCGc -3'
miRNA:   3'- -CAGCGUCU------GCAUGUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 50421 0.66 0.891567
Target:  5'- cGUCGCGGagccgcucgugcaGCGUGCGCGugAAGCUgCGcCGGc -3'
miRNA:   3'- -CAGCGUC-------------UGCAUGUGC--UUCGG-GC-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.