miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 138196 0.67 0.856236
Target:  5'- -gCGCGGGCGgGCGgGggGCaggGCGGa -3'
miRNA:   3'- caGCGUCUGCaUGUgCuuCGgg-CGCC- -5'
23604 5' -55.9 NC_005261.1 + 138120 0.68 0.806509
Target:  5'- -aCGgGGACGggggcCGCGAcGGCCgGCGGg -3'
miRNA:   3'- caGCgUCUGCau---GUGCU-UCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 137912 0.67 0.871278
Target:  5'- cUCGCGGGCcc-CGCGAgcgGGCCCggcuGCGGc -3'
miRNA:   3'- cAGCGUCUGcauGUGCU---UCGGG----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 136815 0.66 0.911156
Target:  5'- cUCGUAGcCGUAgACGgcGCCCccGCGc -3'
miRNA:   3'- cAGCGUCuGCAUgUGCuuCGGG--CGCc -5'
23604 5' -55.9 NC_005261.1 + 136441 0.74 0.520717
Target:  5'- cUCGCGGGCGU-CGCaGggGCaCGCGGc -3'
miRNA:   3'- cAGCGUCUGCAuGUG-CuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 135325 0.68 0.806509
Target:  5'- --gGCGGcCGUGCugGAcuuuGGCCCggaGCGGu -3'
miRNA:   3'- cagCGUCuGCAUGugCU----UCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 134973 0.68 0.806509
Target:  5'- -aCGCAGACGgcgaGgACGggGCCgC-CGGg -3'
miRNA:   3'- caGCGUCUGCa---UgUGCuuCGG-GcGCC- -5'
23604 5' -55.9 NC_005261.1 + 134542 0.72 0.580409
Target:  5'- -gCGCAGACGUgaccgccccuuGCugGGcGGCgCCGCGGc -3'
miRNA:   3'- caGCGUCUGCA-----------UGugCU-UCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 134185 0.69 0.788596
Target:  5'- cUUGCGGAgGgccugGCGCGGcucGGCgCGCGGg -3'
miRNA:   3'- cAGCGUCUgCa----UGUGCU---UCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 134038 0.72 0.614905
Target:  5'- cUCGCGGccauggccggccacgGCccGUACACGAAGCUCGCGcGg -3'
miRNA:   3'- cAGCGUC---------------UG--CAUGUGCUUCGGGCGC-C- -5'
23604 5' -55.9 NC_005261.1 + 133874 0.67 0.848411
Target:  5'- -gCGCcuaccuGugGUcuGCGC-AAGCCCGCGGc -3'
miRNA:   3'- caGCGu-----CugCA--UGUGcUUCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 133833 0.69 0.760701
Target:  5'- -gCGCGGccGCGUGCGCGccguGGCCgGCGc -3'
miRNA:   3'- caGCGUC--UGCAUGUGCu---UCGGgCGCc -5'
23604 5' -55.9 NC_005261.1 + 133258 0.69 0.78311
Target:  5'- -cCGCAGGCGgcGCGCGAGuaccagggcgccggcGCCCGCc- -3'
miRNA:   3'- caGCGUCUGCa-UGUGCUU---------------CGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 133115 0.66 0.892233
Target:  5'- -gCGCGGccuuccacgGCGUGCGCGucucCCUGCGGu -3'
miRNA:   3'- caGCGUC---------UGCAUGUGCuuc-GGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132845 0.66 0.916997
Target:  5'- -aCGCGGcCGUcuacacGCACGGgcacAGCCUGCGc -3'
miRNA:   3'- caGCGUCuGCA------UGUGCU----UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 132633 0.66 0.922603
Target:  5'- -gCGCcgaGGACGcggGCGCGGcGGCCCuaGCGGc -3'
miRNA:   3'- caGCG---UCUGCa--UGUGCU-UCGGG--CGCC- -5'
23604 5' -55.9 NC_005261.1 + 132563 0.72 0.600667
Target:  5'- -gCGCAGuACGgcUGCGAAgacgucggcgcGCCCGCGGa -3'
miRNA:   3'- caGCGUC-UGCauGUGCUU-----------CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132330 0.68 0.827172
Target:  5'- -gCGgGGACcUGCACGggGCcaugcgcagcuuccgCCGCGGc -3'
miRNA:   3'- caGCgUCUGcAUGUGCuuCG---------------GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132171 0.66 0.905079
Target:  5'- -cUGCAGGCa-GCGCGGgcgggGGCCCGCa- -3'
miRNA:   3'- caGCGUCUGcaUGUGCU-----UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 132085 0.68 0.840391
Target:  5'- cGUCGCcgcugccgcggaGGGCGgcCGCGAcgcGCUCGUGGa -3'
miRNA:   3'- -CAGCG------------UCUGCauGUGCUu--CGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.