miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 132001 0.66 0.916997
Target:  5'- aGUCGCGGACGgcgACAacuGGgCCGCc- -3'
miRNA:   3'- -CAGCGUCUGCa--UGUgcuUCgGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 131748 0.71 0.692084
Target:  5'- -aCGCGGACG-GCACGccGGCCggCGCGGc -3'
miRNA:   3'- caGCGUCUGCaUGUGCu-UCGG--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 130516 0.66 0.898771
Target:  5'- -gCGCAGGCGcugGC-CGAAGCgCGCc- -3'
miRNA:   3'- caGCGUCUGCa--UGuGCUUCGgGCGcc -5'
23604 5' -55.9 NC_005261.1 + 130215 0.66 0.911156
Target:  5'- -cUGCAGGCGgaagaGCGucGGCCCGCu- -3'
miRNA:   3'- caGCGUCUGCaug--UGCu-UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 129565 0.66 0.922603
Target:  5'- --gGCGGGCGUAgAgGAGgaggcggccgcGCgCCGCGGg -3'
miRNA:   3'- cagCGUCUGCAUgUgCUU-----------CG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 127636 0.66 0.922603
Target:  5'- -aCGCGacGGCGgcgGCGCcggGggGCgCGCGGg -3'
miRNA:   3'- caGCGU--CUGCa--UGUG---CuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 127094 0.66 0.922603
Target:  5'- -cCGCAauGACGgcuggGCGCGguGaCCCGCGa -3'
miRNA:   3'- caGCGU--CUGCa----UGUGCuuC-GGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 126961 0.66 0.892233
Target:  5'- -gCGgGGGCGgcaGCGCGAA-CCgCGCGGg -3'
miRNA:   3'- caGCgUCUGCa--UGUGCUUcGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 126507 0.71 0.641399
Target:  5'- -cCGCAGGCGgucugcCugGgcGCCCGCGc -3'
miRNA:   3'- caGCGUCUGCau----GugCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 125297 0.67 0.856236
Target:  5'- -cCGCGGGCGccggaccCGCGGGcGCuCCGCGGc -3'
miRNA:   3'- caGCGUCUGCau-----GUGCUU-CG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 124252 0.69 0.760701
Target:  5'- --gGCAGGCGccGCGCGGcgccGCCCGCGc -3'
miRNA:   3'- cagCGUCUGCa-UGUGCUu---CGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 122614 0.68 0.822947
Target:  5'- uGUCGUGccugugcuugaacGGCGaGCGCGAGGCCCgGCGc -3'
miRNA:   3'- -CAGCGU-------------CUGCaUGUGCUUCGGG-CGCc -5'
23604 5' -55.9 NC_005261.1 + 122307 0.71 0.671898
Target:  5'- -cCGCAGGCG-ACGCccgGGCCgGCGGu -3'
miRNA:   3'- caGCGUCUGCaUGUGcu-UCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 122143 0.66 0.905079
Target:  5'- --gGUGGugGUGCACGGccgacgccAGCucgaCCGCGGc -3'
miRNA:   3'- cagCGUCugCAUGUGCU--------UCG----GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 121836 0.66 0.911156
Target:  5'- -cCGCGGcgGCGcaccgGCGCcagcAGCCCGCGGc -3'
miRNA:   3'- caGCGUC--UGCa----UGUGcu--UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 121772 0.68 0.806509
Target:  5'- -gCGCGGugGggugGC-CGcGGCCgGCGGg -3'
miRNA:   3'- caGCGUCugCa---UGuGCuUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 121166 0.66 0.916997
Target:  5'- gGUUGCccGGGCGcucggUGCACGGggccggggccgGGCCCGgGGc -3'
miRNA:   3'- -CAGCG--UCUGC-----AUGUGCU-----------UCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 121067 0.75 0.454364
Target:  5'- -gCGCGG-UGUGCGCGgcGCCgGCGGc -3'
miRNA:   3'- caGCGUCuGCAUGUGCuuCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 120359 0.68 0.815235
Target:  5'- -gCGCuGGACgGUGCGCGAcGGCgCCGCGc -3'
miRNA:   3'- caGCG-UCUG-CAUGUGCU-UCG-GGCGCc -5'
23604 5' -55.9 NC_005261.1 + 119038 0.73 0.560299
Target:  5'- cGUCGCcGACGguaACGc-GCCCGCGGc -3'
miRNA:   3'- -CAGCGuCUGCaugUGCuuCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.