miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 118927 0.66 0.916997
Target:  5'- -cCGCGGGCGcggcgccGCGCGGcuGgCCGCGGc -3'
miRNA:   3'- caGCGUCUGCa------UGUGCUu-CgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 118890 0.72 0.580409
Target:  5'- -cCGCGGGCGcGCugGuGGCCUGCGu -3'
miRNA:   3'- caGCGUCUGCaUGugCuUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 118851 0.68 0.823796
Target:  5'- -gCGCGGAgGgcgGCGC---GCCCGCGGc -3'
miRNA:   3'- caGCGUCUgCa--UGUGcuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 118721 0.73 0.560299
Target:  5'- cGUCGCGGGCGgGCACGgcGUCgCGCu- -3'
miRNA:   3'- -CAGCGUCUGCaUGUGCuuCGG-GCGcc -5'
23604 5' -55.9 NC_005261.1 + 118152 0.68 0.839579
Target:  5'- -gCGCAGACGcugGCcgucgcgGCGggGCuugccgucugggCCGCGGg -3'
miRNA:   3'- caGCGUCUGCa--UG-------UGCuuCG------------GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 118110 0.69 0.779425
Target:  5'- -gCGCAGACGcUGCGCcgccGGCUCGCGc -3'
miRNA:   3'- caGCGUCUGC-AUGUGcu--UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 118032 0.69 0.788596
Target:  5'- -aCGCGGGgccCGgcCGCGAcGCCCGCGc -3'
miRNA:   3'- caGCGUCU---GCauGUGCUuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 116632 0.74 0.472876
Target:  5'- -cCGCcGACGaGgGCGAGGCCCGCGc -3'
miRNA:   3'- caGCGuCUGCaUgUGCUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 116518 0.73 0.540386
Target:  5'- -cCGCGG-CG-GCGCGAGGCCCGCc- -3'
miRNA:   3'- caGCGUCuGCaUGUGCUUCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 116481 0.66 0.922603
Target:  5'- -gCGCGGGCGgg-GCG-GGCgCGCGGu -3'
miRNA:   3'- caGCGUCUGCaugUGCuUCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 115825 0.66 0.922603
Target:  5'- -aCGCGGuGCGccagcuuggGCGCGuuGGCCCGCGcGg -3'
miRNA:   3'- caGCGUC-UGCa--------UGUGCu-UCGGGCGC-C- -5'
23604 5' -55.9 NC_005261.1 + 115780 0.74 0.520717
Target:  5'- -gCGUcGACGUACGCGuAGCCCaggaaGCGGa -3'
miRNA:   3'- caGCGuCUGCAUGUGCuUCGGG-----CGCC- -5'
23604 5' -55.9 NC_005261.1 + 115413 0.69 0.770124
Target:  5'- -cCGCGGGCGgcaGC-CGggGCC-GCGGc -3'
miRNA:   3'- caGCGUCUGCa--UGuGCuuCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 114275 0.67 0.871278
Target:  5'- -aCGCGGugGcGCGCGcGGGCUaCGUGGa -3'
miRNA:   3'- caGCGUCugCaUGUGC-UUCGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 112220 0.67 0.848411
Target:  5'- -cCGCAGGUGaccagcaGCACGGAGgCCGUGGa -3'
miRNA:   3'- caGCGUCUGCa------UGUGCUUCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 112172 0.68 0.823796
Target:  5'- uUCGcCGGcCGcGCGCGggGCUCGCuGGc -3'
miRNA:   3'- cAGC-GUCuGCaUGUGCuuCGGGCG-CC- -5'
23604 5' -55.9 NC_005261.1 + 111841 0.69 0.797627
Target:  5'- gGUCGCGGagcGCGUGCGCGccaaCCGCGc -3'
miRNA:   3'- -CAGCGUC---UGCAUGUGCuucgGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 110611 0.66 0.892233
Target:  5'- -aCGUGGACGccgagcUGCGgcUGGAGCCCGcCGGc -3'
miRNA:   3'- caGCGUCUGC------AUGU--GCUUCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 110239 0.74 0.510986
Target:  5'- -gCGUGGGCG-GCGCGgcGCCCGgGGg -3'
miRNA:   3'- caGCGUCUGCaUGUGCuuCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 109852 0.79 0.261436
Target:  5'- cGUUGguGGCGgcuccuggggGCAgCGggGCCCGCGGg -3'
miRNA:   3'- -CAGCguCUGCa---------UGU-GCuuCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.