miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 109216 0.66 0.898771
Target:  5'- cUCGUAGGCGcgGCACGccGCgCGCu- -3'
miRNA:   3'- cAGCGUCUGCa-UGUGCuuCGgGCGcc -5'
23604 5' -55.9 NC_005261.1 + 108568 0.67 0.86386
Target:  5'- cGUCGUGcGACGUgcGCGCGAAggcguuggccucGCCCaCGGg -3'
miRNA:   3'- -CAGCGU-CUGCA--UGUGCUU------------CGGGcGCC- -5'
23604 5' -55.9 NC_005261.1 + 108362 0.69 0.760701
Target:  5'- cGUCGCAGGCGcaucccugccCGCGuccgcGCCCGCGc -3'
miRNA:   3'- -CAGCGUCUGCau--------GUGCuu---CGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 107949 0.66 0.905079
Target:  5'- -aCGUAGucCGUGCGCGG---CCGCGGg -3'
miRNA:   3'- caGCGUCu-GCAUGUGCUucgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 107911 0.69 0.770124
Target:  5'- -cCGCGGccuCGgcCACGAGuGCCgCGCGGa -3'
miRNA:   3'- caGCGUCu--GCauGUGCUU-CGG-GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 107367 0.69 0.779425
Target:  5'- cGUCGUGGGCGc-CGgGgcGCCCGCGu -3'
miRNA:   3'- -CAGCGUCUGCauGUgCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 106832 0.67 0.856236
Target:  5'- -gCGC-GugGUGCGCGucguccAGCCCGCc- -3'
miRNA:   3'- caGCGuCugCAUGUGCu-----UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 106614 0.72 0.610833
Target:  5'- cGUCcCAGACGc-CGCGGAGCCgCGCGa -3'
miRNA:   3'- -CAGcGUCUGCauGUGCUUCGG-GCGCc -5'
23604 5' -55.9 NC_005261.1 + 105978 0.66 0.916997
Target:  5'- -gCGCGG-CGUcgACGccGCCCGCGa -3'
miRNA:   3'- caGCGUCuGCAugUGCuuCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 105590 0.69 0.788596
Target:  5'- cUCGgGGcGCGUGCgcgcgACGAAcGCCUGCGGc -3'
miRNA:   3'- cAGCgUC-UGCAUG-----UGCUU-CGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 105155 0.74 0.510986
Target:  5'- cUCGCGGcucgagggcgGCGUcCACGggGCCCGCc- -3'
miRNA:   3'- cAGCGUC----------UGCAuGUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 104821 0.71 0.661752
Target:  5'- -cCGCAGcgGCGU-CGCGggGCCgcgccaCGCGGa -3'
miRNA:   3'- caGCGUC--UGCAuGUGCuuCGG------GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 104295 0.72 0.631207
Target:  5'- cUCGCAGGCccGCGCGcgcucaaaGAGCgCGCGGa -3'
miRNA:   3'- cAGCGUCUGcaUGUGC--------UUCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 103511 0.71 0.651583
Target:  5'- -cCGCGGACG---GCGgcGUCCGCGGc -3'
miRNA:   3'- caGCGUCUGCaugUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 102951 0.66 0.916997
Target:  5'- -cUGCGGcgGCGgcCGCG-GGCgCCGCGGg -3'
miRNA:   3'- caGCGUC--UGCauGUGCuUCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 100941 0.66 0.892233
Target:  5'- -cUGCAGgcccGCGUcCACGgcGCgCGCGGu -3'
miRNA:   3'- caGCGUC----UGCAuGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 100669 0.75 0.463572
Target:  5'- cGUCGCGGGguuCGcGCGCGAGuGCaCCGCGGc -3'
miRNA:   3'- -CAGCGUCU---GCaUGUGCUU-CG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 100041 0.68 0.832184
Target:  5'- -cCGCGGGCGUcagcucgaGCGCGccgccgccGCCCGgGGg -3'
miRNA:   3'- caGCGUCUGCA--------UGUGCuu------CGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 99803 0.66 0.905079
Target:  5'- -gCGCGGAUGgcgaacaGCGCGccGUCCGcCGGg -3'
miRNA:   3'- caGCGUCUGCa------UGUGCuuCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 99011 0.66 0.898771
Target:  5'- cGUCGCGaGCGgcgGCGCGGcGGCgCGCGc -3'
miRNA:   3'- -CAGCGUcUGCa--UGUGCU-UCGgGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.