miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 98582 0.68 0.840391
Target:  5'- -cCGCGGGCucgggcgaGUAgGCGgcGCCCGCa- -3'
miRNA:   3'- caGCGUCUG--------CAUgUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 98435 0.66 0.905079
Target:  5'- -cUGCGGACccgggccgGUAgGCGgcGCCCGCa- -3'
miRNA:   3'- caGCGUCUG--------CAUgUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 97823 0.7 0.721968
Target:  5'- -cCGCAGACGgcgGCaaaaACGggGgCgGCGGg -3'
miRNA:   3'- caGCGUCUGCa--UG----UGCuuCgGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 97624 0.66 0.916997
Target:  5'- --aGCGGGCGgagcGgGCGGAGCgggCGCGGg -3'
miRNA:   3'- cagCGUCUGCa---UgUGCUUCGg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 97580 0.67 0.86386
Target:  5'- cUCGguGGCGcGgGCGGAGCggGCGGa -3'
miRNA:   3'- cAGCguCUGCaUgUGCUUCGggCGCC- -5'
23604 5' -55.9 NC_005261.1 + 97255 0.67 0.849202
Target:  5'- gGUCGCggggucggguggcgGGACGUACAugcccgacacccCGAAGUcggcaucuucuccguCCGCGGg -3'
miRNA:   3'- -CAGCG--------------UCUGCAUGU------------GCUUCG---------------GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 97177 0.7 0.721968
Target:  5'- gGUCGCGGGCGccgGC-CGGgccgcggccggaAGCgCCGCGGc -3'
miRNA:   3'- -CAGCGUCUGCa--UGuGCU------------UCG-GGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 97081 0.66 0.919268
Target:  5'- cGUCGgAGGCGccgGCugGGccgggggcgccagccGGgCCGCGGc -3'
miRNA:   3'- -CAGCgUCUGCa--UGugCU---------------UCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 95675 0.69 0.788596
Target:  5'- -gCGCGGgugugagcACGUGCACGAGcgcgaguauGCgCGCGGg -3'
miRNA:   3'- caGCGUC--------UGCAUGUGCUU---------CGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 95445 0.66 0.907538
Target:  5'- -aCGCAGAgcacgggccugagccUGUcggcGCugGAgaagaucaaGGCCCGCGGc -3'
miRNA:   3'- caGCGUCU---------------GCA----UGugCU---------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 95378 0.66 0.898771
Target:  5'- cUCGCGGcCccccgGCGCGccGCUCGCGGc -3'
miRNA:   3'- cAGCGUCuGca---UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 94638 0.69 0.788596
Target:  5'- cGUCGUcGGCGcGCGCGAacaugcGGCuCCGCGa -3'
miRNA:   3'- -CAGCGuCUGCaUGUGCU------UCG-GGCGCc -5'
23604 5' -55.9 NC_005261.1 + 94392 0.66 0.903211
Target:  5'- -gCGCGgcggcggccuccucGACGaaggGCGCGAcGUCCGCGGc -3'
miRNA:   3'- caGCGU--------------CUGCa---UGUGCUuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 93898 0.78 0.322179
Target:  5'- gGUCGcCAGcgacuGCGgGCGCGgcGCCCGCGGg -3'
miRNA:   3'- -CAGC-GUC-----UGCaUGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 93673 0.71 0.682011
Target:  5'- -cCGCGGGCGgcgGCgccgGCGggGCgCCgGCGGg -3'
miRNA:   3'- caGCGUCUGCa--UG----UGCuuCG-GG-CGCC- -5'
23604 5' -55.9 NC_005261.1 + 93620 0.67 0.863107
Target:  5'- gGUCGC-GACGccgGCcagcagcagcagcGCGAGGUCCGCGu -3'
miRNA:   3'- -CAGCGuCUGCa--UG-------------UGCUUCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 93469 0.72 0.610833
Target:  5'- -gCGCGGugcCGgggcGCGCGucGCCCGCGGc -3'
miRNA:   3'- caGCGUCu--GCa---UGUGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 93430 0.67 0.86386
Target:  5'- -cCGC-GAUGUGCuuGAGGgCCGUGGc -3'
miRNA:   3'- caGCGuCUGCAUGugCUUCgGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 93005 0.74 0.482274
Target:  5'- cGUCuugaAGGCGUACGCGAgcgcccacaAGCCCGCGc -3'
miRNA:   3'- -CAGcg--UCUGCAUGUGCU---------UCGGGCGCc -5'
23604 5' -55.9 NC_005261.1 + 92606 0.77 0.337032
Target:  5'- cUCGCGGcGCGUGC-CGggGCCC-CGGg -3'
miRNA:   3'- cAGCGUC-UGCAUGuGCuuCGGGcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.