miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23604 5' -55.9 NC_005261.1 + 95445 0.66 0.907538
Target:  5'- -aCGCAGAgcacgggccugagccUGUcggcGCugGAgaagaucaaGGCCCGCGGc -3'
miRNA:   3'- caGCGUCU---------------GCA----UGugCU---------UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 9625 0.66 0.907538
Target:  5'- --gGCAGGCGggggugggggcugggUGgGCGggGCCCacucggGCGGg -3'
miRNA:   3'- cagCGUCUGC---------------AUgUGCuuCGGG------CGCC- -5'
23604 5' -55.9 NC_005261.1 + 99803 0.66 0.905079
Target:  5'- -gCGCGGAUGgcgaacaGCGCGccGUCCGcCGGg -3'
miRNA:   3'- caGCGUCUGCa------UGUGCuuCGGGC-GCC- -5'
23604 5' -55.9 NC_005261.1 + 98435 0.66 0.905079
Target:  5'- -cUGCGGACccgggccgGUAgGCGgcGCCCGCa- -3'
miRNA:   3'- caGCGUCUG--------CAUgUGCuuCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 84343 0.66 0.905079
Target:  5'- cUCGCGcACGcGCcaaagucgaagGCGccGCCCGCGGg -3'
miRNA:   3'- cAGCGUcUGCaUG-----------UGCuuCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 74880 0.66 0.905079
Target:  5'- -aCGCGG-CGgcgGCgGCGGAGUCgGCGGc -3'
miRNA:   3'- caGCGUCuGCa--UG-UGCUUCGGgCGCC- -5'
23604 5' -55.9 NC_005261.1 + 132171 0.66 0.905079
Target:  5'- -cUGCAGGCa-GCGCGGgcgggGGCCCGCa- -3'
miRNA:   3'- caGCGUCUGcaUGUGCU-----UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 48115 0.66 0.911156
Target:  5'- -aCG-AGACGgGCAUGgcGCgCGCGGg -3'
miRNA:   3'- caGCgUCUGCaUGUGCuuCGgGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 74949 0.66 0.911156
Target:  5'- -gCGCGGGCGcGCucggcgcgcuCGAGGCCgCGCGc -3'
miRNA:   3'- caGCGUCUGCaUGu---------GCUUCGG-GCGCc -5'
23604 5' -55.9 NC_005261.1 + 130215 0.66 0.911156
Target:  5'- -cUGCAGGCGgaagaGCGucGGCCCGCu- -3'
miRNA:   3'- caGCGUCUGCaug--UGCu-UCGGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 97624 0.66 0.916997
Target:  5'- --aGCGGGCGgagcGgGCGGAGCgggCGCGGg -3'
miRNA:   3'- cagCGUCUGCa---UgUGCUUCGg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 61781 0.66 0.916997
Target:  5'- aGUCgaGCAGAguUGUGCGCGuGAGCUCcauGCGGc -3'
miRNA:   3'- -CAG--CGUCU--GCAUGUGC-UUCGGG---CGCC- -5'
23604 5' -55.9 NC_005261.1 + 23478 0.66 0.916997
Target:  5'- --nGCGGcgaGUGCGCG-GGCCCGCcuGGg -3'
miRNA:   3'- cagCGUCug-CAUGUGCuUCGGGCG--CC- -5'
23604 5' -55.9 NC_005261.1 + 19329 0.66 0.916997
Target:  5'- aGUCGUAG-CGcGCACGugccagcAGCUCGgGGg -3'
miRNA:   3'- -CAGCGUCuGCaUGUGCu------UCGGGCgCC- -5'
23604 5' -55.9 NC_005261.1 + 29034 0.66 0.911156
Target:  5'- gGUUGgGGAUG-ACACGggGgCCGCc- -3'
miRNA:   3'- -CAGCgUCUGCaUGUGCuuCgGGCGcc -5'
23604 5' -55.9 NC_005261.1 + 121836 0.66 0.911156
Target:  5'- -cCGCGGcgGCGcaccgGCGCcagcAGCCCGCGGc -3'
miRNA:   3'- caGCGUC--UGCa----UGUGcu--UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 64751 0.66 0.911156
Target:  5'- cGUUGCGGAaGUugGCcucGGccAGCUCGCGGc -3'
miRNA:   3'- -CAGCGUCUgCAugUG---CU--UCGGGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 57450 0.66 0.911156
Target:  5'- -gCGCGacGGCGUcCGCGAAGagcaCGCGGa -3'
miRNA:   3'- caGCGU--CUGCAuGUGCUUCgg--GCGCC- -5'
23604 5' -55.9 NC_005261.1 + 37300 0.66 0.911156
Target:  5'- cUCGCGGAuCGccccccGCACGAGGa-CGCGGu -3'
miRNA:   3'- cAGCGUCU-GCa-----UGUGCUUCggGCGCC- -5'
23604 5' -55.9 NC_005261.1 + 136815 0.66 0.911156
Target:  5'- cUCGUAGcCGUAgACGgcGCCCccGCGc -3'
miRNA:   3'- cAGCGUCuGCAUgUGCuuCGGG--CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.