miRNA display CGI


Results 41 - 60 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 110695 0.66 0.560485
Target:  5'- -aGGGCuuCCGCGcCCA-CGUgGCCGUCa -3'
miRNA:   3'- cgCCUG--GGCGCaGGUgGCGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 5503 0.66 0.560485
Target:  5'- aGCuGGGgCCGCGgcagCgGCgGCgagGCCGCCg -3'
miRNA:   3'- -CG-CCUgGGCGCa---GgUGgCGg--CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 34038 0.66 0.560485
Target:  5'- cGCGGcGCgCGCGcugCC-CUGCCuGCaCGCCu -3'
miRNA:   3'- -CGCC-UGgGCGCa--GGuGGCGG-CG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 95496 0.66 0.560485
Target:  5'- gGCGGcaucgACCCGCGgCCAUU-CCG-CGCCa -3'
miRNA:   3'- -CGCC-----UGGGCGCaGGUGGcGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 116392 0.66 0.560485
Target:  5'- cGgGGGgCCGCGUgCACgCGCaC-CCGCUu -3'
miRNA:   3'- -CgCCUgGGCGCAgGUG-GCG-GcGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 101084 0.66 0.551116
Target:  5'- ---cGCCCGCGgCCGCCuGCagCGCgGCCg -3'
miRNA:   3'- cgccUGGGCGCaGGUGG-CG--GCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 83844 0.66 0.551116
Target:  5'- gGCGGG-CCGCGgccCCGCUgggcugggccggGCCGgaCGCCg -3'
miRNA:   3'- -CGCCUgGGCGCa--GGUGG------------CGGCg-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 104520 0.66 0.541795
Target:  5'- gGCGG--CCGCGaCgGCgGCCGCCaCCa -3'
miRNA:   3'- -CGCCugGGCGCaGgUGgCGGCGGcGG- -5'
23605 3' -64.8 NC_005261.1 + 4951 0.66 0.541795
Target:  5'- cGCGG-CCCagGCGcCC-CCgGCCGCgGCg -3'
miRNA:   3'- -CGCCuGGG--CGCaGGuGG-CGGCGgCGg -5'
23605 3' -64.8 NC_005261.1 + 21881 0.66 0.541795
Target:  5'- cGCGcGCCCGCGgg-GCCcCCGCCcCCa -3'
miRNA:   3'- -CGCcUGGGCGCaggUGGcGGCGGcGG- -5'
23605 3' -64.8 NC_005261.1 + 44027 0.66 0.541795
Target:  5'- gGCGGGCggccgCCGCG-CgGCgGCCGCgGgCg -3'
miRNA:   3'- -CGCCUG-----GGCGCaGgUGgCGGCGgCgG- -5'
23605 3' -64.8 NC_005261.1 + 110131 0.66 0.541795
Target:  5'- cGCuGACgcaccccgCCGaCGUCaucggCAUgGCCGCCGCCa -3'
miRNA:   3'- -CGcCUG--------GGC-GCAG-----GUGgCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 125769 0.66 0.541795
Target:  5'- cGCGGGCUCgGCuaaggCCAagGCCGCUGCg -3'
miRNA:   3'- -CGCCUGGG-CGca---GGUggCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 85560 0.66 0.548314
Target:  5'- uGCGGcgccgcgagguucgGCgCCGCGaCCGCgGCCuCCGCg -3'
miRNA:   3'- -CGCC--------------UG-GGCGCaGGUGgCGGcGGCGg -5'
23605 3' -64.8 NC_005261.1 + 62401 0.66 0.550181
Target:  5'- cGUGGGgaagagcagcUCCGCGcCCGCCgaggccagcgcgaGCCGgUCGCCg -3'
miRNA:   3'- -CGCCU----------GGGCGCaGGUGG-------------CGGC-GGCGG- -5'
23605 3' -64.8 NC_005261.1 + 118298 0.66 0.550181
Target:  5'- cGCGGGCaCCGgGgcgcacuUCCGCaccgCGCUGCUgGCCa -3'
miRNA:   3'- -CGCCUG-GGCgC-------AGGUG----GCGGCGG-CGG- -5'
23605 3' -64.8 NC_005261.1 + 8677 0.66 0.551116
Target:  5'- -gGGGCCCGCGaCCACgUGagaaCGCUGgCa -3'
miRNA:   3'- cgCCUGGGCGCaGGUG-GCg---GCGGCgG- -5'
23605 3' -64.8 NC_005261.1 + 4576 0.66 0.551116
Target:  5'- gGCGGGuCCgGCGgggcgCC-CC-CCGgCGCCa -3'
miRNA:   3'- -CGCCU-GGgCGCa----GGuGGcGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 55575 0.66 0.551116
Target:  5'- uCGccCCCGCaGUCCGCgGCggCGUCGCCc -3'
miRNA:   3'- cGCcuGGGCG-CAGGUGgCG--GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 72933 0.66 0.551116
Target:  5'- -gGGugUCGCG--CAgCGCCGgCGCCg -3'
miRNA:   3'- cgCCugGGCGCagGUgGCGGCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.